Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm6211-202ENSMUST00000167849 925 ntBASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 Gm20049-201ENSMUST00000219950 730 ntBASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 AC122769.4-201ENSMUST00000228166 901 ntBASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Gm7977-201ENSMUST00000193787 748 ntBASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Col27a1Q5QNQ9 Gm37856-201ENSMUST00000191634 999 ntBASIC19.84■□□□□ 0.77
Col27a1Q5QNQ9 Gm26524-201ENSMUST00000192339 390 ntBASIC19.84■□□□□ 0.77
Col27a1Q5QNQ9 Gm3807-201ENSMUST00000193520 1168 ntBASIC19.84■□□□□ 0.77
Col27a1Q5QNQ9 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Col27a1Q5QNQ9 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Col27a1Q5QNQ9 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
Col27a1Q5QNQ9 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Col27a1Q5QNQ9 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col27a1Q5QNQ9 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.83■□□□□ 0.77
Col27a1Q5QNQ9 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Col27a1Q5QNQ9 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Col27a1Q5QNQ9 Gm10571-201ENSMUST00000097869 1638 ntBASIC19.83■□□□□ 0.76
Col27a1Q5QNQ9 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col27a1Q5QNQ9 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Col27a1Q5QNQ9 Gm7290-201ENSMUST00000104990 617 ntBASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Gm12918-201ENSMUST00000120234 636 ntBASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Gm15710-201ENSMUST00000121821 636 ntBASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Gm5075-201ENSMUST00000196916 622 ntBASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Col27a1Q5QNQ9 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Col27a1Q5QNQ9 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col27a1Q5QNQ9 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.8■□□□□ 0.76
Col27a1Q5QNQ9 Gm13146-201ENSMUST00000118508 780 ntBASIC19.8■□□□□ 0.76
Col27a1Q5QNQ9 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC19.8■□□□□ 0.76
Col27a1Q5QNQ9 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col27a1Q5QNQ9 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Col27a1Q5QNQ9 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col27a1Q5QNQ9 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Col27a1Q5QNQ9 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col27a1Q5QNQ9 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.79■□□□□ 0.76
Col27a1Q5QNQ9 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col27a1Q5QNQ9 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col27a1Q5QNQ9 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col27a1Q5QNQ9 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Col27a1Q5QNQ9 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.79■□□□□ 0.76
Col27a1Q5QNQ9 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Col27a1Q5QNQ9 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Col27a1Q5QNQ9 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.78■□□□□ 0.76
Col27a1Q5QNQ9 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col27a1Q5QNQ9 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col27a1Q5QNQ9 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Col27a1Q5QNQ9 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col27a1Q5QNQ9 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Col27a1Q5QNQ9 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Trmt13-210ENSMUST00000198454 880 ntBASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 AC130671.1-201ENSMUST00000227384 1237 ntBASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Col27a1Q5QNQ9 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC19.77■□□□□ 0.75
Col27a1Q5QNQ9 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Col27a1Q5QNQ9 Mir6982-201ENSMUST00000184354 68 ntBASIC19.76■□□□□ 0.75
Col27a1Q5QNQ9 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col27a1Q5QNQ9 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col27a1Q5QNQ9 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col27a1Q5QNQ9 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Col27a1Q5QNQ9 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms