Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Ddb1Q3U1J4 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ddb1Q3U1J4 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
Ddb1Q3U1J4 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.73
Ddb1Q3U1J4 Gm3807-201ENSMUST00000193520 1168 ntBASIC25.83■■□□□ 1.73
Ddb1Q3U1J4 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ddb1Q3U1J4 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ddb1Q3U1J4 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ddb1Q3U1J4 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ddb1Q3U1J4 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC25.83■■□□□ 1.73
Ddb1Q3U1J4 Gm12527-201ENSMUST00000117967 564 ntBASIC25.82■■□□□ 1.72
Ddb1Q3U1J4 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Ddb1Q3U1J4 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Ddb1Q3U1J4 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Ddb1Q3U1J4 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Ddb1Q3U1J4 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
Ddb1Q3U1J4 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
Ddb1Q3U1J4 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Ddb1Q3U1J4 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Ddb1Q3U1J4 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
Ddb1Q3U1J4 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Ddb1Q3U1J4 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Ddb1Q3U1J4 Gm8520-201ENSMUST00000186517 868 ntBASIC25.79■■□□□ 1.72
Ddb1Q3U1J4 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Ddb1Q3U1J4 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Ddb1Q3U1J4 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC25.79■■□□□ 1.72
Ddb1Q3U1J4 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Ddb1Q3U1J4 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Ddb1Q3U1J4 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Ddb1Q3U1J4 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
Ddb1Q3U1J4 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ddb1Q3U1J4 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ddb1Q3U1J4 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
Ddb1Q3U1J4 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ddb1Q3U1J4 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Ddb1Q3U1J4 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.72
Ddb1Q3U1J4 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC25.76■■□□□ 1.71
Ddb1Q3U1J4 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
Ddb1Q3U1J4 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC25.76■■□□□ 1.71
Ddb1Q3U1J4 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC25.76■■□□□ 1.71
Ddb1Q3U1J4 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Ddb1Q3U1J4 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Ddb1Q3U1J4 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC25.74■■□□□ 1.71
Ddb1Q3U1J4 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ddb1Q3U1J4 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ddb1Q3U1J4 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Ddb1Q3U1J4 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ddb1Q3U1J4 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ddb1Q3U1J4 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
Ddb1Q3U1J4 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC25.73■■□□□ 1.71
Ddb1Q3U1J4 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC25.73■■□□□ 1.71
Ddb1Q3U1J4 Gm10571-201ENSMUST00000097869 1638 ntBASIC25.73■■□□□ 1.71
Ddb1Q3U1J4 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Ddb1Q3U1J4 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Ddb1Q3U1J4 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Ddb1Q3U1J4 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC25.72■■□□□ 1.71
Ddb1Q3U1J4 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Ddb1Q3U1J4 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Ddb1Q3U1J4 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
Ddb1Q3U1J4 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
Ddb1Q3U1J4 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC25.71■■□□□ 1.71
Ddb1Q3U1J4 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ddb1Q3U1J4 AC153962.1-201ENSMUST00000218530 1948 ntBASIC25.7■■□□□ 1.7
Ddb1Q3U1J4 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Ddb1Q3U1J4 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Ddb1Q3U1J4 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Ddb1Q3U1J4 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
Ddb1Q3U1J4 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Ddb1Q3U1J4 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
Ddb1Q3U1J4 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
Ddb1Q3U1J4 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Ddb1Q3U1J4 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ddb1Q3U1J4 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ddb1Q3U1J4 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
Ddb1Q3U1J4 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Ddb1Q3U1J4 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Ddb1Q3U1J4 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Ddb1Q3U1J4 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC25.67■■□□□ 1.7
Ddb1Q3U1J4 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC25.67■■□□□ 1.7
Ddb1Q3U1J4 Gm13148-201ENSMUST00000118892 745 ntBASIC25.67■■□□□ 1.7
Ddb1Q3U1J4 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms