Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Lire1P11260 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Lire1P11260 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
Lire1P11260 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Gm38342-201ENSMUST00000195710 2980 ntBASIC18.7■□□□□ 0.58
Lire1P11260 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Lire1P11260 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lire1P11260 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lire1P11260 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Lire1P11260 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lire1P11260 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lire1P11260 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Lire1P11260 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lire1P11260 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.69■□□□□ 0.58
Lire1P11260 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lire1P11260 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lire1P11260 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lire1P11260 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lire1P11260 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lire1P11260 AC153962.1-201ENSMUST00000218530 1948 ntBASIC18.68■□□□□ 0.58
Lire1P11260 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lire1P11260 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lire1P11260 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lire1P11260 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC18.68■□□□□ 0.58
Lire1P11260 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Lire1P11260 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
Lire1P11260 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.68■□□□□ 0.58
Lire1P11260 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Lire1P11260 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC18.68■□□□□ 0.58
Lire1P11260 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lire1P11260 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Lire1P11260 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Lire1P11260 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Lire1P11260 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.67■□□□□ 0.58
Lire1P11260 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Lire1P11260 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lire1P11260 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lire1P11260 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lire1P11260 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Lire1P11260 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Lire1P11260 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.66■□□□□ 0.58
Lire1P11260 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lire1P11260 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
Lire1P11260 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lire1P11260 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Lire1P11260 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lire1P11260 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lire1P11260 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Lire1P11260 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC18.65■□□□□ 0.58
Lire1P11260 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
Lire1P11260 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lire1P11260 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lire1P11260 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Lire1P11260 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Lire1P11260 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Lire1P11260 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lire1P11260 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Lire1P11260 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lire1P11260 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lire1P11260 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lire1P11260 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Lire1P11260 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lire1P11260 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Lire1P11260 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC18.63■□□□□ 0.57
Lire1P11260 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Lire1P11260 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC18.63■□□□□ 0.57
Lire1P11260 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lire1P11260 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lire1P11260 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Lire1P11260 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lire1P11260 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Lire1P11260 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
Lire1P11260 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lire1P11260 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.62■□□□□ 0.57
Lire1P11260 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lire1P11260 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC18.62■□□□□ 0.57
Lire1P11260 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.62■□□□□ 0.57
Lire1P11260 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lire1P11260 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lire1P11260 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Lire1P11260 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Lire1P11260 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lire1P11260 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lire1P11260 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Lire1P11260 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lire1P11260 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lire1P11260 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Lire1P11260 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.61■□□□□ 0.57
Lire1P11260 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.61■□□□□ 0.57
Lire1P11260 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.61■□□□□ 0.57
Lire1P11260 Serp2-204ENSMUST00000228055 705 ntBASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms