Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC12.56□□□□□ -0.4
Traf1P39428 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Traf1P39428 Gm15036-201ENSMUST00000118880 400 ntBASIC12.56□□□□□ -0.4
Traf1P39428 Gm11979-201ENSMUST00000119629 743 ntBASIC12.56□□□□□ -0.4
Traf1P39428 Gm25677-201ENSMUST00000174983 72 ntBASIC12.56□□□□□ -0.4
Traf1P39428 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Gm29521-201ENSMUST00000187061 745 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC12.56□□□□□ -0.4
Traf1P39428 Gm37723-201ENSMUST00000194480 565 ntBASIC12.56□□□□□ -0.4
Traf1P39428 Psenen-203ENSMUST00000207747 669 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Traf1P39428 Gpr137b-ps-202ENSMUST00000220647 1159 ntBASIC12.56□□□□□ -0.4
Traf1P39428 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC12.56□□□□□ -0.4
Traf1P39428 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 CT010486.3-201ENSMUST00000224555 811 ntBASIC12.56□□□□□ -0.4
Traf1P39428 Zmiz1os1-202ENSMUST00000225188 1223 ntBASIC12.56□□□□□ -0.4
Traf1P39428 Triap1-201ENSMUST00000031508 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Rnf144b-201ENSMUST00000068891 4640 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Kcnmb3-201ENSMUST00000164954 1715 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Traf1P39428 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Gpr101-201ENSMUST00000057645 5410 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Lrba-202ENSMUST00000192145 8843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Traf1P39428 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 5330413D20Rik-201ENSMUST00000208649 1416 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Olfr1090-202ENSMUST00000215991 2103 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Oxct1-201ENSMUST00000110690 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Traf1P39428 Gm14052-201ENSMUST00000121434 1031 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Mipep-ps-201ENSMUST00000177439 291 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Gm5700-201ENSMUST00000191483 989 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Gm44498-201ENSMUST00000199509 111 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Gm43249-201ENSMUST00000200464 458 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Gm18706-201ENSMUST00000210053 1066 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Gm7183-201ENSMUST00000213870 1005 ntBASIC12.55□□□□□ -0.4
Traf1P39428 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 CT025679.1-201ENSMUST00000227106 449 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Mustn1-201ENSMUST00000040715 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 E330021D16Rik-201ENSMUST00000058713 1116 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Traf1P39428 Olfr311-201ENSMUST00000071625 927 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Traf1P39428 Gm6478-201ENSMUST00000099450 742 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Cyp2d41-ps-201ENSMUST00000180453 1503 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Triml2-202ENSMUST00000209200 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Kdelc1-201ENSMUST00000027213 1765 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 C130083M11Rik-201ENSMUST00000197171 2072 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Traf1P39428 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Zfp236-202ENSMUST00000182122 6059 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Sez6l-201ENSMUST00000075387 6055 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Traf1P39428 Gm43937-201ENSMUST00000204640 3122 ntBASIC12.55□□□□□ -0.4
Traf1P39428 Arhgap33-204ENSMUST00000207860 4396 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Traf1P39428 Gm11033-201ENSMUST00000127757 1445 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 B4galnt2-201ENSMUST00000038343 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Gm37333-201ENSMUST00000192904 2251 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC12.54□□□□□ -0.4
Traf1P39428 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Traf1P39428 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Impdh2-ps-201ENSMUST00000120826 1545 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Traf1P39428 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC12.54□□□□□ -0.4
Traf1P39428 1700071K01Rik-201ENSMUST00000117522 819 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Fthl17-ps2-201ENSMUST00000122268 528 ntBASIC12.54□□□□□ -0.4
Traf1P39428 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC12.54□□□□□ -0.4
Traf1P39428 Gm16288-201ENSMUST00000137940 367 ntBASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms