Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Rint1-203ENSMUST00000115113 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Plec-218ENSMUST00000169714 15001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Plec-201ENSMUST00000023226 15001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Cdkal1-202ENSMUST00000091674 2427 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Fbln5-201ENSMUST00000021603 5829 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Mup-ps29-201ENSMUST00000122281 202 ntBASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm22846-201ENSMUST00000157706 270 ntBASIC8.88□□□□□ -0.99
Hmgb3O54879 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm27627-201ENSMUST00000183644 150 ntBASIC8.88□□□□□ -0.99
Hmgb3O54879 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Itgam-201ENSMUST00000064821 4682 ntAPPRIS ALT2 TSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm26448-201ENSMUST00000082446 203 ntBASIC8.88□□□□□ -0.99
Hmgb3O54879 Epg5-201ENSMUST00000044622 9672 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm42450-201ENSMUST00000199286 2644 ntTSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Napepld-202ENSMUST00000115217 3954 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm43972-201ENSMUST00000181398 1467 ntBASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Abcb8-203ENSMUST00000115077 3074 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Adgrf3-201ENSMUST00000088117 3099 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 2810032G03Rik-202ENSMUST00000163627 2514 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Nudt7-203ENSMUST00000109109 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Slc18a2-201ENSMUST00000026084 3803 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Rimbp2-205ENSMUST00000199537 6966 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Mfn2-201ENSMUST00000030884 4341 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 9530053A07Rik-201ENSMUST00000059886 7922 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
Hmgb3O54879 Med1-201ENSMUST00000018304 5845 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Slc45a3-202ENSMUST00000177943 3212 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Fam161a-201ENSMUST00000058269 1927 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hmgb3O54879 Gm26614-201ENSMUST00000180386 3909 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Kcnmb1-201ENSMUST00000020362 4191 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Adar-204ENSMUST00000118341 2399 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Slc28a1-202ENSMUST00000119083 2899 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Zfp957-201ENSMUST00000040802 2613 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm44115-201ENSMUST00000203917 2069 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm10643-201ENSMUST00000098592 1577 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Skiv2l-201ENSMUST00000046022 3951 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Oprm1-230ENSMUST00000154906 2039 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm7357-201ENSMUST00000195361 2991 ntBASIC8.87□□□□□ -0.99
Hmgb3O54879 Gmip-201ENSMUST00000036074 3933 ntAPPRIS P2 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Clasp1-218ENSMUST00000190571 7910 ntAPPRIS P5 TSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm19680-201ENSMUST00000095050 1513 ntBASIC8.87□□□□□ -0.99
Hmgb3O54879 Idua-202ENSMUST00000112563 3373 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Prdm2-201ENSMUST00000105778 7304 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Synpo2-202ENSMUST00000106426 7063 ntAPPRIS P2 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Zfp133-ps-204ENSMUST00000149523 424 ntTSL 3 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm25700-201ENSMUST00000177693 110 ntBASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm27441-201ENSMUST00000185000 105 ntBASIC8.87□□□□□ -0.99
Hmgb3O54879 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm19208-201ENSMUST00000213861 912 ntBASIC8.87□□□□□ -0.99
Hmgb3O54879 Slc2a2-201ENSMUST00000029240 5569 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Bbx-208ENSMUST00000138166 8743 ntAPPRIS P3 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Qars-203ENSMUST00000134939 2374 ntTSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Meox2-201ENSMUST00000041183 2360 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Zfp462-201ENSMUST00000030131 4823 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Rel-201ENSMUST00000102864 7466 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm20236-201ENSMUST00000193037 4540 ntBASIC8.87□□□□□ -0.99
Hmgb3O54879 Gm37094-201ENSMUST00000193352 4540 ntBASIC8.87□□□□□ -0.99
Hmgb3O54879 Zfr-201ENSMUST00000122941 4850 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Dopey1-218ENSMUST00000190957 9187 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
Hmgb3O54879 Mblac2-201ENSMUST00000057598 3957 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hmgb3O54879 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hmgb3O54879 Tnk2-206ENSMUST00000115125 4313 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
Hmgb3O54879 Gm15482-201ENSMUST00000152691 4529 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
Hmgb3O54879 Agbl4-203ENSMUST00000106587 2631 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
Hmgb3O54879 Ank3-237ENSMUST00000183074 4948 ntTSL 5 BASIC8.86□□□□□ -0.99
Hmgb3O54879 Ralgps1-204ENSMUST00000113165 6192 ntAPPRIS P1 TSL 5 BASIC8.86□□□□□ -0.99
Hmgb3O54879 Adgre5-202ENSMUST00000075843 3000 ntAPPRIS P3 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hmgb3O54879 Nup210l-201ENSMUST00000029548 5681 ntAPPRIS P2 TSL 5 BASIC8.86□□□□□ -0.99
Hmgb3O54879 Tex11-202ENSMUST00000113716 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hmgb3O54879 Zfp605-202ENSMUST00000112528 3158 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hmgb3O54879 Gm7742-201ENSMUST00000167648 1527 ntBASIC8.86□□□□□ -0.99
Hmgb3O54879 Gm7732-201ENSMUST00000170486 1527 ntBASIC8.86□□□□□ -0.99
Hmgb3O54879 Gm7740-201ENSMUST00000186171 1527 ntBASIC8.86□□□□□ -0.99
Hmgb3O54879 Gm7736-201ENSMUST00000096981 1527 ntBASIC8.86□□□□□ -0.99
Hmgb3O54879 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hmgb3O54879 4632418H02Rik-201ENSMUST00000217287 2721 ntBASIC8.86□□□□□ -0.99
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms