Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 A830018L16Rik-209ENSMUST00000179089 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Palm2-201ENSMUST00000102904 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Scnn1g-201ENSMUST00000000221 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Dcst2-201ENSMUST00000208216 2285 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 4930432L08Rik-201ENSMUST00000132154 1608 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Cyp2j13-202ENSMUST00000097973 1648 ntTSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Ms4a6b-201ENSMUST00000025580 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Focad-202ENSMUST00000107147 1177 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm14006-201ENSMUST00000122132 981 ntBASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm24140-201ENSMUST00000122773 326 ntBASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm15886-201ENSMUST00000123155 1250 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm12000-201ENSMUST00000132007 629 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm17231-201ENSMUST00000163186 645 ntTSL 3 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm29595-202ENSMUST00000187954 466 ntTSL 3 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm5543-201ENSMUST00000193329 1091 ntBASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Ftl1-204ENSMUST00000210864 503 ntTSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Gm9644-201ENSMUST00000212828 1183 ntBASIC14.82□□□□□ -0.04
Usp40Q8BWR4 AC155709.2-201ENSMUST00000219360 678 ntTSL 3 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 AC116797.2-202ENSMUST00000223587 1017 ntBASIC14.82□□□□□ -0.04
Usp40Q8BWR4 AC164883.7-201ENSMUST00000228534 851 ntBASIC14.82□□□□□ -0.04
Usp40Q8BWR4 AC141884.2-201ENSMUST00000228811 775 ntBASIC14.82□□□□□ -0.04
Usp40Q8BWR4 4930546C10Rik-201ENSMUST00000025428 363 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Olfr414-201ENSMUST00000053178 955 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 2010001K21Rik-201ENSMUST00000060680 519 ntBASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Arhgap33os-201ENSMUST00000124276 2648 ntTSL 2 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Grk3-204ENSMUST00000197888 1938 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Usp40Q8BWR4 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Tstd2-201ENSMUST00000107770 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Atxn7l1-203ENSMUST00000110824 1675 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Msrb1-202ENSMUST00000115262 886 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gm9166-201ENSMUST00000120293 561 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Vmn1r-ps63-201ENSMUST00000174565 989 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Mir6359-201ENSMUST00000183668 81 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gm44155-201ENSMUST00000203923 412 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gm45812-201ENSMUST00000212199 192 ntTSL 5 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gm8796-201ENSMUST00000219122 936 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gm3791-201ENSMUST00000220790 768 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 CT030135.2-201ENSMUST00000225255 893 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 AC133517.1-201ENSMUST00000225825 594 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Tnfrsf18-201ENSMUST00000040274 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Ptma-201ENSMUST00000045897 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gm10228-201ENSMUST00000089105 532 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gm43622-201ENSMUST00000200140 2019 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gm8094-201ENSMUST00000165136 1408 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Gm42851-201ENSMUST00000201325 1411 ntBASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Ncmap-201ENSMUST00000064481 1448 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 Tubgcp4-201ENSMUST00000039541 4206 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Usp40Q8BWR4 9530026P05Rik-204ENSMUST00000204449 1740 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Gtf2ird1-206ENSMUST00000111244 3461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Gm21142-201ENSMUST00000179999 2604 ntBASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Gm23255-201ENSMUST00000102244 110 ntBASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Lyrm1-202ENSMUST00000106516 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Pxmp4-202ENSMUST00000109703 560 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Myl1-203ENSMUST00000120415 621 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 1700112K13Rik-201ENSMUST00000141892 701 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Gm27441-201ENSMUST00000185000 105 ntBASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Trav18-202ENSMUST00000186573 325 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Gm29669-201ENSMUST00000188605 881 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Gm37257-201ENSMUST00000194871 717 ntTSL 5 BASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Gm8643-201ENSMUST00000195228 625 ntBASIC14.8□□□□□ -0.04
Usp40Q8BWR4 Gm42617-201ENSMUST00000197640 1229 ntBASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 73.4 ms