Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Prrxl1-204ENSMUST00000189022 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Traf1P39428 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Gm18210-201ENSMUST00000209001 1524 ntBASIC12.64□□□□□ -0.39
Traf1P39428 Cast-212ENSMUST00000223309 1529 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Hddc3-201ENSMUST00000032747 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Gm14213-201ENSMUST00000119778 768 ntBASIC12.64□□□□□ -0.39
Traf1P39428 Ubl5-211ENSMUST00000162303 505 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
Traf1P39428 Gm20441-201ENSMUST00000173512 756 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Traf1P39428 Gm5210-201ENSMUST00000182150 1010 ntBASIC12.64□□□□□ -0.39
Traf1P39428 Gm28032-201ENSMUST00000184104 96 ntBASIC12.64□□□□□ -0.39
Traf1P39428 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC12.64□□□□□ -0.39
Traf1P39428 Gm19918-201ENSMUST00000194858 400 ntBASIC12.64□□□□□ -0.39
Traf1P39428 Myo1h-206ENSMUST00000196467 1208 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Olfr1358-201ENSMUST00000204477 1064 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Traf1P39428 Gm44753-202ENSMUST00000208297 562 ntTSL 5 BASIC12.64□□□□□ -0.39
Traf1P39428 Gm45500-201ENSMUST00000211676 803 ntBASIC12.64□□□□□ -0.39
Traf1P39428 AC112146.1-201ENSMUST00000221641 733 ntTSL 3 BASIC12.64□□□□□ -0.39
Traf1P39428 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC12.64□□□□□ -0.39
Traf1P39428 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
Traf1P39428 Gm13583-202ENSMUST00000151931 1476 ntTSL 2 BASIC12.64□□□□□ -0.39
Traf1P39428 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Traf1P39428 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Flad1-202ENSMUST00000107426 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 AC159195.3-201ENSMUST00000225162 2211 ntBASIC12.64□□□□□ -0.39
Traf1P39428 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Traf1P39428 Flvcr2-201ENSMUST00000040461 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
Traf1P39428 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Traf1P39428 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Traf1P39428 AC174797.1-201ENSMUST00000224339 1649 ntBASIC12.63□□□□□ -0.39
Traf1P39428 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Nxpe5-204ENSMUST00000161047 2379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Atp6v1a-201ENSMUST00000063661 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Traf1P39428 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
Traf1P39428 Parp11-202ENSMUST00000112191 3414 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Ccl19-ps1-201ENSMUST00000119621 327 ntBASIC12.63□□□□□ -0.39
Traf1P39428 Gm11993-201ENSMUST00000121861 820 ntBASIC12.63□□□□□ -0.39
Traf1P39428 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Gm18201-201ENSMUST00000174735 875 ntBASIC12.63□□□□□ -0.39
Traf1P39428 Prm2-202ENSMUST00000189593 674 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Traf1P39428 Gm43401-201ENSMUST00000198829 394 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Gm32591-203ENSMUST00000204725 696 ntTSL 3 BASIC12.63□□□□□ -0.39
Traf1P39428 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 AC134601.2-201ENSMUST00000221071 130 ntBASIC12.63□□□□□ -0.39
Traf1P39428 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC12.63□□□□□ -0.39
Traf1P39428 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Nufip2-204ENSMUST00000181023 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Spata5-202ENSMUST00000108112 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Tube1-201ENSMUST00000019991 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Jade1-201ENSMUST00000026865 5481 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
Traf1P39428 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Rsph10b-203ENSMUST00000166847 2878 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Traf1P39428 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Traf1P39428 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 Gm8020-201ENSMUST00000170174 1406 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 Mocs2-216ENSMUST00000184672 1447 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 Gm29245-201ENSMUST00000187332 1416 ntBASIC12.62□□□□□ -0.39
Traf1P39428 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC12.62□□□□□ -0.39
Traf1P39428 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Traf1P39428 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms