Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Cux1P53564 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 AC160410.1-201ENSMUST00000219298 1972 ntBASIC16.51■□□□□ 0.23
Cux1P53564 Gm43051-201ENSMUST00000201096 2678 ntBASIC16.51■□□□□ 0.23
Cux1P53564 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
Cux1P53564 Grik4-201ENSMUST00000034515 3413 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Cux1P53564 Cutal-203ENSMUST00000113068 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC16.51■□□□□ 0.23
Cux1P53564 Iyd-201ENSMUST00000019896 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Tpd52-202ENSMUST00000091354 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Micalcl-203ENSMUST00000106645 2309 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Cux1P53564 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cux1P53564 Ucp1-201ENSMUST00000034146 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC16.5■□□□□ 0.23
Cux1P53564 Gm24981-201ENSMUST00000104459 132 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Tnnt3-213ENSMUST00000105952 1040 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Tnnt3-215ENSMUST00000105954 1052 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Tnnt3-216ENSMUST00000105955 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Tnnt3-218ENSMUST00000105958 1050 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Rpl7a-ps11-201ENSMUST00000118791 801 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Gm14829-201ENSMUST00000121499 1138 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Gm13191-201ENSMUST00000136489 416 ntTSL 3 BASIC16.5■□□□□ 0.23
Cux1P53564 Gm14717-201ENSMUST00000140450 649 ntTSL 3 BASIC16.5■□□□□ 0.23
Cux1P53564 Optc-204ENSMUST00000149380 1180 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Tnnt3-225ENSMUST00000179658 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Gm26750-201ENSMUST00000181718 711 ntTSL 5 BASIC16.5■□□□□ 0.23
Cux1P53564 Gm38191-201ENSMUST00000194509 770 ntTSL 5 BASIC16.5■□□□□ 0.23
Cux1P53564 AC153153.1-201ENSMUST00000225803 793 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Tmsb15b2-201ENSMUST00000069803 450 ntTSL 2 BASIC16.5■□□□□ 0.23
Cux1P53564 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Gm26440-201ENSMUST00000082591 129 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Gm16477-201ENSMUST00000085365 801 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Gm17415-201ENSMUST00000096427 789 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Cux1P53564 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Olfr272-202ENSMUST00000107667 1936 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
Cux1P53564 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Gsdma3-202ENSMUST00000107508 1587 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Cux1P53564 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Ak8-201ENSMUST00000074156 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Babam2-202ENSMUST00000071531 1308 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Cux1P53564 Ppp6c-205ENSMUST00000204701 1495 ntTSL 5 BASIC16.5■□□□□ 0.23
Cux1P53564 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Cux1P53564 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Runx1t1-204ENSMUST00000105566 6090 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
Cux1P53564 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Vwa3b-205ENSMUST00000162449 1360 ntAPPRIS P5 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Aldh3a2-201ENSMUST00000066277 2892 ntTSL 2 BASIC16.5■□□□□ 0.23
Cux1P53564 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC16.5■□□□□ 0.23
Cux1P53564 Gm13547-202ENSMUST00000113810 629 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cux1P53564 Gm7781-201ENSMUST00000117258 788 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Gm15476-201ENSMUST00000118247 1191 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Gm12684-201ENSMUST00000118675 999 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Gm13898-201ENSMUST00000141865 610 ntBASIC16.5■□□□□ 0.23
Cux1P53564 Gm5190-201ENSMUST00000192434 357 ntBASIC16.5■□□□□ 0.23
Cux1P53564 CT030011.1-201ENSMUST00000221959 264 ntTSL 5 BASIC16.5■□□□□ 0.23
Cux1P53564 Gm35963-201ENSMUST00000211762 1425 ntTSL 5 BASIC16.49■□□□□ 0.23
Cux1P53564 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cux1P53564 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 AC130671.3-201ENSMUST00000227393 1897 ntBASIC16.49■□□□□ 0.23
Cux1P53564 Kyat1-201ENSMUST00000044038 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Magee2-201ENSMUST00000033575 2316 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Cux1P53564 Abcf3-201ENSMUST00000003319 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Ankrd36-201ENSMUST00000109855 1363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cux1P53564 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Maats1os-201ENSMUST00000133496 326 ntTSL 3 BASIC16.49■□□□□ 0.23
Cux1P53564 Gm12972-201ENSMUST00000152986 1006 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Gm27441-201ENSMUST00000185000 105 ntBASIC16.49■□□□□ 0.23
Cux1P53564 Gm36980-201ENSMUST00000195643 622 ntBASIC16.49■□□□□ 0.23
Cux1P53564 Gm21149-201ENSMUST00000197995 1212 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Cux1P53564 Btg4-203ENSMUST00000213680 1282 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Cux1P53564 AC154431.1-201ENSMUST00000224910 880 ntBASIC16.49■□□□□ 0.23
Cux1P53564 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Picalm-201ENSMUST00000049537 3528 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Xlr4b-201ENSMUST00000069077 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cux1P53564 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Gm45677-201ENSMUST00000209975 1341 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Rnf13-210ENSMUST00000200497 2573 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Tipin-205ENSMUST00000216594 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cux1P53564 Gm37969-201ENSMUST00000195777 3409 ntBASIC16.48■□□□□ 0.23
Cux1P53564 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Cux1P53564 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms