Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Mirlet7i-201ENSMUST00000083472 85 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 Gm23105-201ENSMUST00000083719 134 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 Vmn2r125-201ENSMUST00000096794 1110 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC8.88□□□□□ -0.99
Hoxd3P09027 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Nin-201ENSMUST00000021468 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.99
Hoxd3P09027 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 AC164426.2-201ENSMUST00000225993 2492 ntBASIC8.88□□□□□ -0.99
Hoxd3P09027 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC8.88□□□□□ -0.99
Hoxd3P09027 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Tnc-203ENSMUST00000107372 7106 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm13384-201ENSMUST00000117166 1344 ntBASIC8.87□□□□□ -0.99
Hoxd3P09027 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Exo1-201ENSMUST00000039725 7796 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gfm1-201ENSMUST00000077271 4078 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 AC160410.1-201ENSMUST00000219298 1972 ntBASIC8.87□□□□□ -0.99
Hoxd3P09027 Upp1-202ENSMUST00000101525 1157 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Ola1-203ENSMUST00000112055 1251 ntTSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC8.87□□□□□ -0.99
Hoxd3P09027 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm8206-203ENSMUST00000171428 997 ntTSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC8.87□□□□□ -0.99
Hoxd3P09027 2610016A17Rik-203ENSMUST00000188711 515 ntTSL 2 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm5251-201ENSMUST00000188959 472 ntBASIC8.87□□□□□ -0.99
Hoxd3P09027 Plet1os-202ENSMUST00000190941 1119 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm37700-201ENSMUST00000192617 965 ntBASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm37458-201ENSMUST00000194055 410 ntBASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Olfr1310-201ENSMUST00000207169 1009 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Cers3-202ENSMUST00000208521 1159 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 1700063D05Rik-204ENSMUST00000213914 1007 ntTSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC8.87□□□□□ -0.99
Hoxd3P09027 AC153646.1-201ENSMUST00000223229 1279 ntBASIC8.87□□□□□ -0.99
Hoxd3P09027 AV026068-225ENSMUST00000225042 490 ntBASIC8.87□□□□□ -0.99
Hoxd3P09027 AC123735.1-201ENSMUST00000227358 605 ntBASIC8.87□□□□□ -0.99
Hoxd3P09027 Ssxb1-201ENSMUST00000037297 875 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Olfr1137-201ENSMUST00000099850 933 ntAPPRIS P1 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Fam186a-202ENSMUST00000100209 9334 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Ahsa2-202ENSMUST00000109539 3583 ntAPPRIS ALT2 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
Hoxd3P09027 Myh9-201ENSMUST00000016771 7433 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
Hoxd3P09027 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC8.86□□□□□ -0.99
Hoxd3P09027 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC8.86□□□□□ -0.99
Hoxd3P09027 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC8.86□□□□□ -0.99
Hoxd3P09027 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Adcy6-201ENSMUST00000096224 6038 ntAPPRIS P2 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 1700080N15Rik-202ENSMUST00000154360 1316 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Peg3-201ENSMUST00000051209 8694 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC8.86□□□□□ -0.99
Hoxd3P09027 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC8.86□□□□□ -0.99
Hoxd3P09027 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC8.86□□□□□ -0.99
Retrieved 100 of 76,532 protein–RNA pairs in 63 ms