Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Cux1P53564 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC16.6■□□□□ 0.25
Cux1P53564 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC16.6■□□□□ 0.25
Cux1P53564 9530059O14Rik-204ENSMUST00000215759 1606 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Gm9-201ENSMUST00000101636 817 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Smt3h2-ps2-201ENSMUST00000122370 288 ntBASIC16.6■□□□□ 0.25
Cux1P53564 Gm14145-201ENSMUST00000133385 508 ntTSL 3 BASIC16.6■□□□□ 0.25
Cux1P53564 Gm14146-201ENSMUST00000155885 508 ntTSL 5 BASIC16.6■□□□□ 0.25
Cux1P53564 4930505M18Rik-201ENSMUST00000175854 1288 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Gm37141-201ENSMUST00000191938 422 ntBASIC16.6■□□□□ 0.25
Cux1P53564 AC124503.1-201ENSMUST00000218524 526 ntTSL 3 BASIC16.6■□□□□ 0.25
Cux1P53564 Gm46349-201ENSMUST00000219678 917 ntTSL 5 BASIC16.6■□□□□ 0.25
Cux1P53564 AC161052.1-201ENSMUST00000222856 910 ntTSL 5 BASIC16.6■□□□□ 0.25
Cux1P53564 Myl10-201ENSMUST00000005611 688 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Cux1P53564 Dnaja1-201ENSMUST00000030118 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Cux1P53564 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Cux1P53564 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Defb48-201ENSMUST00000100493 445 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Spaca9-201ENSMUST00000102877 671 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Use1-203ENSMUST00000110054 973 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Gm13624-201ENSMUST00000120263 462 ntBASIC16.59■□□□□ 0.25
Cux1P53564 Zfp961-204ENSMUST00000136516 601 ntTSL 2 BASIC16.59■□□□□ 0.25
Cux1P53564 Gng2-203ENSMUST00000159073 960 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Cux1P53564 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Gm29283-201ENSMUST00000187394 288 ntTSL 5 BASIC16.59■□□□□ 0.25
Cux1P53564 4930478P22Rik-202ENSMUST00000201921 723 ntTSL 3 BASIC16.59■□□□□ 0.25
Cux1P53564 Gm34667-201ENSMUST00000222974 1258 ntTSL 5 BASIC16.59■□□□□ 0.25
Cux1P53564 3830406C13Rik-213ENSMUST00000225294 1191 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Cux1P53564 AC242269.1-201ENSMUST00000227020 741 ntBASIC16.59■□□□□ 0.25
Cux1P53564 Gm9790-201ENSMUST00000054148 288 ntBASIC16.59■□□□□ 0.25
Cux1P53564 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC16.59■□□□□ 0.25
Cux1P53564 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Cux1P53564 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cux1P53564 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Cux1P53564 Gm43052-201ENSMUST00000201451 1628 ntBASIC16.58■□□□□ 0.25
Cux1P53564 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Cux1P53564 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cux1P53564 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cux1P53564 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cux1P53564 Gm44975-201ENSMUST00000207435 1390 ntBASIC16.58■□□□□ 0.25
Cux1P53564 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Cux1P53564 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Cux1P53564 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Gm6727-201ENSMUST00000204102 1518 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC16.58■□□□□ 0.24
Cux1P53564 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC16.58■□□□□ 0.24
Cux1P53564 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Plac9b-201ENSMUST00000100809 388 ntTSL 2 BASIC16.58■□□□□ 0.24
Cux1P53564 Itpa-ps1-201ENSMUST00000117207 597 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm15626-201ENSMUST00000117478 868 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm15554-201ENSMUST00000120406 913 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm14370-201ENSMUST00000122460 868 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm45591-201ENSMUST00000129058 843 ntTSL 3 BASIC16.58■□□□□ 0.24
Cux1P53564 Gm12254-201ENSMUST00000134617 471 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm15273-201ENSMUST00000142302 868 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm7023-201ENSMUST00000147295 868 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm14357-201ENSMUST00000178352 868 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm14361-201ENSMUST00000178547 868 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm14348-201ENSMUST00000179183 868 ntBASIC16.58■□□□□ 0.24
Cux1P53564 1110020A21Rik-201ENSMUST00000181147 853 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Gm19058-201ENSMUST00000192135 598 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm37009-201ENSMUST00000193297 361 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm2474-201ENSMUST00000195162 559 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Gm20186-201ENSMUST00000201775 737 ntTSL 3 BASIC16.58■□□□□ 0.24
Cux1P53564 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Cux1P53564 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Cux1P53564 Theg-201ENSMUST00000020566 1444 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Cux1P53564 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Cux1P53564 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Cux1P53564 AC116596.1-201ENSMUST00000228112 1762 ntBASIC16.58■□□□□ 0.24
Cux1P53564 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
Cux1P53564 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Cux1P53564 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms