Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Traf1P39428 CT010480.4-201ENSMUST00000224654 2283 ntBASIC12.73□□□□□ -0.37
Traf1P39428 Tmem134-216ENSMUST00000171743 3701 ntTSL 5 BASIC12.73□□□□□ -0.37
Traf1P39428 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Colec11-201ENSMUST00000036136 1423 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Rufy2-204ENSMUST00000131718 2816 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Traf1P39428 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC12.73□□□□□ -0.37
Traf1P39428 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC12.73□□□□□ -0.37
Traf1P39428 Gm4862-201ENSMUST00000170405 438 ntBASIC12.73□□□□□ -0.37
Traf1P39428 Gm13290-201ENSMUST00000177806 968 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Traf1P39428 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC12.73□□□□□ -0.37
Traf1P39428 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Platr10-202ENSMUST00000191479 818 ntBASIC12.73□□□□□ -0.37
Traf1P39428 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC12.73□□□□□ -0.37
Traf1P39428 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Gm4903-201ENSMUST00000210462 405 ntBASIC12.73□□□□□ -0.37
Traf1P39428 Gm40639-201ENSMUST00000214642 625 ntTSL 5 BASIC12.73□□□□□ -0.37
Traf1P39428 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 CT025618.1-203ENSMUST00000227008 589 ntBASIC12.73□□□□□ -0.37
Traf1P39428 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Traf1P39428 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Traf1P39428 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Gm37447-201ENSMUST00000195625 2928 ntBASIC12.72□□□□□ -0.37
Traf1P39428 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Galr1-201ENSMUST00000065224 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Traf1P39428 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Traf1P39428 Gm22937-201ENSMUST00000103954 131 ntBASIC12.72□□□□□ -0.37
Traf1P39428 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Traf1P39428 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 AU015836-201ENSMUST00000120624 674 ntTSL 3 BASIC12.72□□□□□ -0.37
Traf1P39428 Gm13026-201ENSMUST00000140113 608 ntTSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Gm7593-201ENSMUST00000187246 644 ntBASIC12.72□□□□□ -0.37
Traf1P39428 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC12.72□□□□□ -0.37
Traf1P39428 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 Gm31557-202ENSMUST00000213995 722 ntTSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 CT025531.1-201ENSMUST00000214534 622 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC12.72□□□□□ -0.37
Traf1P39428 AC159196.1-201ENSMUST00000225524 377 ntBASIC12.72□□□□□ -0.37
Traf1P39428 AC156501.1-201ENSMUST00000228219 270 ntBASIC12.72□□□□□ -0.37
Traf1P39428 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 4631405J19Rik-201ENSMUST00000099699 1225 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Traf1P39428 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 Olfr1415-202ENSMUST00000204009 2815 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Traf1P39428 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 Gm9466-201ENSMUST00000218144 2246 ntBASIC12.72□□□□□ -0.37
Traf1P39428 Gm42815-201ENSMUST00000198787 1470 ntBASIC12.72□□□□□ -0.37
Traf1P39428 Smok4a-201ENSMUST00000074512 1455 ntBASIC12.72□□□□□ -0.37
Traf1P39428 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Traf1P39428 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
Traf1P39428 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC12.71□□□□□ -0.37
Traf1P39428 Gtf3c2-201ENSMUST00000088010 4552 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC12.71□□□□□ -0.37
Traf1P39428 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Fyb2-202ENSMUST00000106804 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Traf1P39428 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Gm35363-201ENSMUST00000209330 1317 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Gps2-202ENSMUST00000072581 1311 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Traf1P39428 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Traf1P39428 Gm45206-201ENSMUST00000206885 2285 ntBASIC12.71□□□□□ -0.37
Traf1P39428 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.37
Traf1P39428 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC12.71□□□□□ -0.37
Traf1P39428 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms