Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdc40Q9DC48 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Cdc40Q9DC48 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Cdc40Q9DC48 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdc40Q9DC48 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdc40Q9DC48 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cdc40Q9DC48 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cdc40Q9DC48 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.6■□□□□ 0.57
Cdc40Q9DC48 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
Cdc40Q9DC48 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cdc40Q9DC48 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cdc40Q9DC48 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Cdc40Q9DC48 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cdc40Q9DC48 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cdc40Q9DC48 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Gm9870-201ENSMUST00000063874 645 ntBASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdc40Q9DC48 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Cdc40Q9DC48 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.58■□□□□ 0.56
Cdc40Q9DC48 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Cdc40Q9DC48 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Cdc40Q9DC48 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Cdc40Q9DC48 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cdc40Q9DC48 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cdc40Q9DC48 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdc40Q9DC48 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC18.56■□□□□ 0.56
Cdc40Q9DC48 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.56■□□□□ 0.56
Cdc40Q9DC48 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cdc40Q9DC48 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
Cdc40Q9DC48 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Cdc40Q9DC48 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC18.56■□□□□ 0.56
Cdc40Q9DC48 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cdc40Q9DC48 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cdc40Q9DC48 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cdc40Q9DC48 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdc40Q9DC48 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdc40Q9DC48 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Cdc40Q9DC48 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdc40Q9DC48 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdc40Q9DC48 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdc40Q9DC48 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdc40Q9DC48 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
Cdc40Q9DC48 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC18.55■□□□□ 0.56
Cdc40Q9DC48 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Serp2-204ENSMUST00000228055 705 ntBASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdc40Q9DC48 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdc40Q9DC48 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cdc40Q9DC48 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cdc40Q9DC48 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cdc40Q9DC48 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Cdc40Q9DC48 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.52■□□□□ 0.56
Cdc40Q9DC48 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cdc40Q9DC48 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cdc40Q9DC48 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cdc40Q9DC48 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Cdc40Q9DC48 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms