Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usf1Q61069 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usf1Q61069 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usf1Q61069 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usf1Q61069 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Usf1Q61069 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
Usf1Q61069 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usf1Q61069 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usf1Q61069 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Usf1Q61069 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC18.42■□□□□ 0.54
Usf1Q61069 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC18.42■□□□□ 0.54
Usf1Q61069 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC18.42■□□□□ 0.54
Usf1Q61069 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usf1Q61069 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usf1Q61069 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usf1Q61069 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usf1Q61069 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usf1Q61069 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Usf1Q61069 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Usf1Q61069 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC18.41■□□□□ 0.54
Usf1Q61069 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.41■□□□□ 0.54
Usf1Q61069 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Usf1Q61069 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Usf1Q61069 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Usf1Q61069 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Usf1Q61069 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usf1Q61069 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usf1Q61069 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usf1Q61069 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usf1Q61069 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usf1Q61069 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Usf1Q61069 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Usf1Q61069 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Usf1Q61069 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Usf1Q61069 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usf1Q61069 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usf1Q61069 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Usf1Q61069 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Usf1Q61069 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC18.39■□□□□ 0.53
Usf1Q61069 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.39■□□□□ 0.53
Usf1Q61069 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usf1Q61069 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usf1Q61069 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usf1Q61069 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Usf1Q61069 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Usf1Q61069 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
Usf1Q61069 Gm13234-201ENSMUST00000120010 747 ntBASIC18.38■□□□□ 0.53
Usf1Q61069 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC18.38■□□□□ 0.53
Usf1Q61069 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC18.38■□□□□ 0.53
Usf1Q61069 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.38■□□□□ 0.53
Usf1Q61069 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Usf1Q61069 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Usf1Q61069 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Usf1Q61069 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usf1Q61069 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
Usf1Q61069 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Usf1Q61069 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.37■□□□□ 0.53
Usf1Q61069 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.37■□□□□ 0.53
Usf1Q61069 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Usf1Q61069 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC18.37■□□□□ 0.53
Usf1Q61069 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Usf1Q61069 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC18.37■□□□□ 0.53
Usf1Q61069 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Usf1Q61069 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Usf1Q61069 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Usf1Q61069 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usf1Q61069 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usf1Q61069 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Usf1Q61069 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Usf1Q61069 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Usf1Q61069 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Usf1Q61069 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.35■□□□□ 0.53
Usf1Q61069 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usf1Q61069 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC18.35■□□□□ 0.53
Usf1Q61069 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.35■□□□□ 0.53
Usf1Q61069 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Usf1Q61069 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usf1Q61069 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usf1Q61069 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Usf1Q61069 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Usf1Q61069 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usf1Q61069 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.34■□□□□ 0.53
Usf1Q61069 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usf1Q61069 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.34■□□□□ 0.53
Usf1Q61069 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Usf1Q61069 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Usf1Q61069 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Usf1Q61069 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Usf1Q61069 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Usf1Q61069 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms