Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col27a1Q5QNQ9 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.96■□□□□ 0.79
Col27a1Q5QNQ9 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col27a1Q5QNQ9 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col27a1Q5QNQ9 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col27a1Q5QNQ9 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col27a1Q5QNQ9 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col27a1Q5QNQ9 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Col27a1Q5QNQ9 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col27a1Q5QNQ9 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col27a1Q5QNQ9 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col27a1Q5QNQ9 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col27a1Q5QNQ9 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col27a1Q5QNQ9 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col27a1Q5QNQ9 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col27a1Q5QNQ9 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Col27a1Q5QNQ9 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Col27a1Q5QNQ9 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.95■□□□□ 0.78
Col27a1Q5QNQ9 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col27a1Q5QNQ9 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col27a1Q5QNQ9 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Col27a1Q5QNQ9 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Col27a1Q5QNQ9 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.94■□□□□ 0.78
Col27a1Q5QNQ9 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col27a1Q5QNQ9 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Col27a1Q5QNQ9 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC19.93■□□□□ 0.78
Col27a1Q5QNQ9 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col27a1Q5QNQ9 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col27a1Q5QNQ9 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC19.92■□□□□ 0.78
Col27a1Q5QNQ9 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col27a1Q5QNQ9 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col27a1Q5QNQ9 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col27a1Q5QNQ9 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col27a1Q5QNQ9 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col27a1Q5QNQ9 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.92■□□□□ 0.78
Col27a1Q5QNQ9 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col27a1Q5QNQ9 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col27a1Q5QNQ9 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col27a1Q5QNQ9 AC158538.1-201ENSMUST00000225870 294 ntBASIC19.91■□□□□ 0.78
Col27a1Q5QNQ9 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Col27a1Q5QNQ9 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col27a1Q5QNQ9 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col27a1Q5QNQ9 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col27a1Q5QNQ9 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col27a1Q5QNQ9 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Gm5408-201ENSMUST00000197998 747 ntBASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 AC135963.1-201ENSMUST00000211640 717 ntBASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC19.9■□□□□ 0.78
Col27a1Q5QNQ9 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col27a1Q5QNQ9 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Gm10812-201ENSMUST00000099864 546 ntBASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col27a1Q5QNQ9 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col27a1Q5QNQ9 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Col27a1Q5QNQ9 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Col27a1Q5QNQ9 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col27a1Q5QNQ9 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.88■□□□□ 0.77
Col27a1Q5QNQ9 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.88■□□□□ 0.77
Col27a1Q5QNQ9 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col27a1Q5QNQ9 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col27a1Q5QNQ9 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Col27a1Q5QNQ9 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col27a1Q5QNQ9 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col27a1Q5QNQ9 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Col27a1Q5QNQ9 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Col27a1Q5QNQ9 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 76.4 ms