Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Pcdhgb8A0A140LI48 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Pcdhgb8A0A140LI48 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Pcdhgb8A0A140LI48 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
Pcdhgb8A0A140LI48 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.47
Pcdhgb8A0A140LI48 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Pcdhgb8A0A140LI48 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Pcdhgb8A0A140LI48 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Pcdhgb8A0A140LI48 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdhgb8A0A140LI48 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdhgb8A0A140LI48 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdhgb8A0A140LI48 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdhgb8A0A140LI48 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Pcdhgb8A0A140LI48 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC17.99■□□□□ 0.47
Pcdhgb8A0A140LI48 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Pcdhgb8A0A140LI48 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdhgb8A0A140LI48 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdhgb8A0A140LI48 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.97■□□□□ 0.47
Pcdhgb8A0A140LI48 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdhgb8A0A140LI48 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC17.97■□□□□ 0.47
Pcdhgb8A0A140LI48 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdhgb8A0A140LI48 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Pcdhgb8A0A140LI48 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdhgb8A0A140LI48 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Pcdhgb8A0A140LI48 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Pcdhgb8A0A140LI48 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC17.96■□□□□ 0.47
Pcdhgb8A0A140LI48 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdhgb8A0A140LI48 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdhgb8A0A140LI48 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdhgb8A0A140LI48 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdhgb8A0A140LI48 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Pcdhgb8A0A140LI48 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Pcdhgb8A0A140LI48 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms