Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm8094-201ENSMUST00000165136 1408 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.35
Scn11aQ9R053 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Scn11aQ9R053 Zfp109-202ENSMUST00000206362 2932 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Scn11aQ9R053 Efna1-201ENSMUST00000029566 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Scn11aQ9R053 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Bpifb1-201ENSMUST00000028987 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm5532-201ENSMUST00000097531 1751 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Mzf1-201ENSMUST00000069289 3597 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Cfap74-204ENSMUST00000123952 2365 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Wfdc2-203ENSMUST00000109345 558 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Mir1190-201ENSMUST00000116925 96 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Rpl7a-ps11-201ENSMUST00000118791 801 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm27833-201ENSMUST00000184285 124 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm37858-201ENSMUST00000192759 1231 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm44388-201ENSMUST00000204350 258 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Olfr209-202ENSMUST00000208246 428 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm45308-201ENSMUST00000210610 415 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 1700018G05Rik-201ENSMUST00000211116 386 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 AC113291.2-201ENSMUST00000215490 1205 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 AC164614.1-201ENSMUST00000216038 397 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm29689-201ENSMUST00000221076 589 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 AC153153.1-201ENSMUST00000225803 793 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm16477-201ENSMUST00000085365 801 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm17415-201ENSMUST00000096427 789 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Larp1b-204ENSMUST00000099121 1030 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm26672-201ENSMUST00000180922 2685 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Gm37324-201ENSMUST00000194500 4504 ntBASIC12.83□□□□□ -0.36
Scn11aQ9R053 Nrf1-201ENSMUST00000004761 1589 ntTSL 5 BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Scn11aQ9R053 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gstm6-204ENSMUST00000106684 1179 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Mettl18-202ENSMUST00000111490 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm13456-201ENSMUST00000118928 1365 ntBASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm16080-201ENSMUST00000152128 692 ntTSL 3 BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm15258-201ENSMUST00000153801 741 ntBASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm7805-201ENSMUST00000154348 448 ntBASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm28042-203ENSMUST00000156805 2844 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm23582-201ENSMUST00000158530 139 ntBASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm28179-201ENSMUST00000188365 613 ntBASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm28079-206ENSMUST00000188554 1170 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm29669-201ENSMUST00000188605 881 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm44155-201ENSMUST00000203923 412 ntBASIC12.82□□□□□ -0.36
Scn11aQ9R053 Eif3k-204ENSMUST00000208616 909 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Slc35b3-201ENSMUST00000021870 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 AC124356.1-201ENSMUST00000221469 698 ntBASIC12.82□□□□□ -0.36
Scn11aQ9R053 AC107711.4-201ENSMUST00000228948 440 ntBASIC12.82□□□□□ -0.36
Scn11aQ9R053 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Olfr1219-201ENSMUST00000099797 936 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Scn11aQ9R053 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm31108-201ENSMUST00000204101 1633 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Scn11aQ9R053 Gm17836-201ENSMUST00000191976 1302 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 Trav13-2-201ENSMUST00000103658 390 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Use1-203ENSMUST00000110054 973 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Rpl10a-ps1-201ENSMUST00000120360 654 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm15373-201ENSMUST00000121495 214 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 Stard6-206ENSMUST00000174118 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 1700019D03Rik-207ENSMUST00000191441 638 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm36980-201ENSMUST00000195643 622 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 1700048F04Rik-201ENSMUST00000199057 1064 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm20186-201ENSMUST00000201775 737 ntTSL 3 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Lcorl-205ENSMUST00000121573 2378 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Slc13a5-205ENSMUST00000208056 3111 ntTSL 5 BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Scn11aQ9R053 Gm32914-201ENSMUST00000203815 2228 ntBASIC12.81□□□□□ -0.36
Scn11aQ9R053 Als2cr12-206ENSMUST00000191565 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms