Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 2610027F03Rik-202ENSMUST00000186982 603 ntTSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 AC129308.3-201ENSMUST00000225652 524 ntBASIC10.25□□□□□ -0.77
Cdc40Q9DC48 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm2174-201ENSMUST00000079663 402 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Taar8b-201ENSMUST00000092654 1035 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Tiam2-202ENSMUST00000169838 5725 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Erbb3-201ENSMUST00000082059 6016 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Ctsb-201ENSMUST00000006235 4743 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Adgrl3-204ENSMUST00000117407 5705 ntTSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Matn2-205ENSMUST00000227759 3569 ntAPPRIS ALT2 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Myo9a-203ENSMUST00000128341 11985 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Cdc40Q9DC48 Tsc2-203ENSMUST00000226284 6266 ntAPPRIS ALT2 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Furin-202ENSMUST00000120753 4332 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Rtl1-201ENSMUST00000149046 6358 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Arih2-201ENSMUST00000013338 3924 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Vwf-203ENSMUST00000112254 8834 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Slco2a1-201ENSMUST00000035148 7122 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm32742-201ENSMUST00000210433 8516 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm8111-201ENSMUST00000117659 987 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm11422-201ENSMUST00000118925 1103 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm26134-201ENSMUST00000178484 110 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm17798-201ENSMUST00000182282 1035 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm9135-201ENSMUST00000182963 990 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Mir7051-201ENSMUST00000184167 73 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm9116-201ENSMUST00000192400 1018 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm37284-201ENSMUST00000193607 539 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm7183-201ENSMUST00000213870 1005 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 AC114645.1-201ENSMUST00000215831 187 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm3619-201ENSMUST00000219947 775 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 AC159002.1-201ENSMUST00000226714 924 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Polr2a-201ENSMUST00000058470 6740 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Hipk2-204ENSMUST00000160360 3907 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gm8899-201ENSMUST00000214635 1332 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Faim2-201ENSMUST00000023750 4520 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Cdc40Q9DC48 AC125374.1-201ENSMUST00000213573 1400 ntBASIC10.24□□□□□ -0.77
Cdc40Q9DC48 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms