Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Pcdhb19-201ENSMUST00000059571 7138 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Alppl2-201ENSMUST00000027455 2092 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Gm28138-201ENSMUST00000186250 2167 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Gm29270-201ENSMUST00000188071 2167 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Gm29392-201ENSMUST00000189429 2167 ntTSL 5 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Gm29252-201ENSMUST00000189869 2167 ntTSL 5 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Gm29305-201ENSMUST00000191054 2167 ntTSL 5 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Traip-201ENSMUST00000049348 2706 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 H2-Q3-201ENSMUST00000172583 608 ntBASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Gm43179-201ENSMUST00000198797 275 ntBASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Gm45575-201ENSMUST00000210283 548 ntBASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Saa-ps-201ENSMUST00000211148 320 ntBASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 AC151275.1-201ENSMUST00000224870 585 ntBASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Pvalb-201ENSMUST00000005860 977 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Amph-201ENSMUST00000003345 3367 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Fgfr1-213ENSMUST00000167764 2915 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Ido2-201ENSMUST00000121992 2452 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Ttll13-201ENSMUST00000058266 3010 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Synpo2l-203ENSMUST00000119483 3696 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Gm42460-201ENSMUST00000198863 2567 ntBASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Tiam2-202ENSMUST00000169838 5725 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Il12rb2-201ENSMUST00000018485 2998 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Ubap2-202ENSMUST00000108068 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Tcf4-203ENSMUST00000114977 3070 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Ptbp1-206ENSMUST00000165704 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Ubr1-201ENSMUST00000028728 7768 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Plekha7-201ENSMUST00000084664 4312 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 4930478P22Rik-203ENSMUST00000202026 2060 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Ccdc28bQ8CEG5 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm45165-201ENSMUST00000207763 1631 ntBASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm10848-201ENSMUST00000192361 1811 ntTSL 2 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Pdcd10-205ENSMUST00000161137 1927 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Ybey-201ENSMUST00000049185 4522 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Nos3-202ENSMUST00000115090 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Enox2-202ENSMUST00000114911 2623 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Bcl2-202ENSMUST00000189999 2841 ntBASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Cdh1-203ENSMUST00000167688 3203 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Aplp2-202ENSMUST00000079758 3504 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm12247-201ENSMUST00000117585 670 ntBASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm11801-201ENSMUST00000117807 746 ntBASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm14724-201ENSMUST00000118400 537 ntBASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm28071-201ENSMUST00000190355 478 ntBASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm45865-201ENSMUST00000211815 945 ntBASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Olfr889-201ENSMUST00000072290 945 ntTSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Nfkbiz-201ENSMUST00000036273 4115 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Tns1-217ENSMUST00000191104 9904 ntAPPRIS P3 TSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Tcn2-202ENSMUST00000109988 1957 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm45889-202ENSMUST00000211255 2358 ntTSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Dqx1-201ENSMUST00000077502 3257 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Rab3gap2-201ENSMUST00000069652 7052 ntAPPRIS P2 TSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm43597-202ENSMUST00000201992 4620 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Ints3-201ENSMUST00000029542 4337 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Lrsam1-202ENSMUST00000113200 4030 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 AC165080.1-201ENSMUST00000215257 3123 ntBASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Cep250-204ENSMUST00000109619 7977 ntAPPRIS P4 TSL 5 BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Nek5-201ENSMUST00000169834 2404 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Sez6l-202ENSMUST00000079491 5857 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Ifih1-201ENSMUST00000028259 5470 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Rpgrip1-201ENSMUST00000111600 4565 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Aldoa-201ENSMUST00000032934 1511 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Ccdc28bQ8CEG5 Gm44617-202ENSMUST00000209122 2763 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Ccdc28bQ8CEG5 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC10.83□□□□□ -0.68
Ccdc28bQ8CEG5 D030018L15Rik-202ENSMUST00000139808 1859 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Ccdc28bQ8CEG5 Rhobtb1-201ENSMUST00000020101 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 68.6 ms