Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Gm19327-201ENSMUST00000220651 3271 ntBASIC12.29□□□□□ -0.44
Usp49Q6P9L4 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Usp49Q6P9L4 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usp49Q6P9L4 Themis2-201ENSMUST00000045154 3079 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usp49Q6P9L4 Nmt2-201ENSMUST00000081932 4461 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Usp49Q6P9L4 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Usp49Q6P9L4 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Gm26912-201ENSMUST00000180988 1483 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Cdc20b-204ENSMUST00000181568 1494 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 1700017B05Rik-201ENSMUST00000034846 4152 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Pa2g4-202ENSMUST00000131728 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Gm13652-201ENSMUST00000143898 3412 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Gm25766-201ENSMUST00000104101 131 ntBASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Gm7255-201ENSMUST00000187371 908 ntBASIC12.28□□□□□ -0.44
Usp49Q6P9L4 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Gm10752-201ENSMUST00000218348 729 ntBASIC12.28□□□□□ -0.44
Usp49Q6P9L4 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Lgi3-203ENSMUST00000226548 1001 ntBASIC12.28□□□□□ -0.44
Usp49Q6P9L4 AC102368.1-201ENSMUST00000227161 892 ntBASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Arhgap4-202ENSMUST00000114404 2895 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Slc7a4-201ENSMUST00000063544 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Gm36957-201ENSMUST00000192982 2824 ntBASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Tmem181b-ps-201ENSMUST00000167717 1413 ntBASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Gm42851-201ENSMUST00000201325 1411 ntBASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Usp49Q6P9L4 Fbxo43-201ENSMUST00000058643 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 Psat1-205ENSMUST00000162053 2291 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 Srpx2-201ENSMUST00000033606 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 AC130823.1-201ENSMUST00000228929 1549 ntBASIC12.27□□□□□ -0.44
Usp49Q6P9L4 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 Morf4l2-201ENSMUST00000033797 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 Arhgap24-204ENSMUST00000112852 2783 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 Dzip1l-204ENSMUST00000112886 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Usp49Q6P9L4 Acsm5-205ENSMUST00000207440 2494 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Gm1848-201ENSMUST00000120711 789 ntBASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Gm12570-201ENSMUST00000122047 1030 ntBASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Gm12224-201ENSMUST00000124047 567 ntTSL 2 BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Gm4982-201ENSMUST00000160440 1098 ntBASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Gm6677-201ENSMUST00000195100 441 ntBASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Gm2875-201ENSMUST00000211333 360 ntBASIC12.27□□□□□ -0.45
Usp49Q6P9L4 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 CT025618.1-203ENSMUST00000227008 589 ntBASIC12.27□□□□□ -0.45
Usp49Q6P9L4 AC154436.1-201ENSMUST00000227272 782 ntBASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Cblb-203ENSMUST00000226593 3864 ntAPPRIS ALT2 BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 BC049352-203ENSMUST00000171799 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Optc-201ENSMUST00000124051 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Mier1-204ENSMUST00000106857 4752 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Chmp1b-202ENSMUST00000210564 2490 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Aldoa-202ENSMUST00000087566 1549 ntTSL 5 BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Usp49Q6P9L4 Kcnk10-201ENSMUST00000110113 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Usp49Q6P9L4 Fbxl5-202ENSMUST00000087465 4237 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 88.9 ms