Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm5542-201ENSMUST00000195485 1089 ntBASIC8.93□□□□□ -0.98
Hoxd3P09027 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC8.93□□□□□ -0.98
Hoxd3P09027 Gm43104-201ENSMUST00000197234 311 ntBASIC8.93□□□□□ -0.98
Hoxd3P09027 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC8.93□□□□□ -0.98
Hoxd3P09027 AC153528.1-201ENSMUST00000217696 434 ntTSL 3 BASIC8.93□□□□□ -0.98
Hoxd3P09027 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC8.93□□□□□ -0.98
Hoxd3P09027 Gm19095-201ENSMUST00000220533 730 ntBASIC8.93□□□□□ -0.98
Hoxd3P09027 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
Hoxd3P09027 AC118639.2-201ENSMUST00000226289 223 ntBASIC8.93□□□□□ -0.98
Hoxd3P09027 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Snora73b-201ENSMUST00000083419 205 ntBASIC8.93□□□□□ -0.98
Hoxd3P09027 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Olfr201-201ENSMUST00000099656 927 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
Hoxd3P09027 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Gm45172-201ENSMUST00000206054 1301 ntBASIC8.93□□□□□ -0.98
Hoxd3P09027 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Arhgap6-202ENSMUST00000087016 1310 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Gm13347-201ENSMUST00000120298 1353 ntBASIC8.93□□□□□ -0.98
Hoxd3P09027 Mterf1b-201ENSMUST00000177258 1368 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Coro6-202ENSMUST00000052515 1476 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Cts7-201ENSMUST00000021892 1518 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC8.93□□□□□ -0.98
Hoxd3P09027 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC8.93□□□□□ -0.98
Hoxd3P09027 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC8.93□□□□□ -0.98
Hoxd3P09027 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
Hoxd3P09027 Auts2-209ENSMUST00000161804 5392 ntAPPRIS P5 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 AC122840.1-201ENSMUST00000220915 3334 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Prr27-201ENSMUST00000002310 1313 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Cenpk-202ENSMUST00000070761 1306 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Olfr3-201ENSMUST00000100151 942 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm25076-201ENSMUST00000104098 132 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm16071-201ENSMUST00000119589 793 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm11244-201ENSMUST00000121243 237 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm15258-201ENSMUST00000153801 741 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm5778-201ENSMUST00000171003 1072 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 1700025F22Rik-203ENSMUST00000181284 562 ntTSL 3 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm17826-201ENSMUST00000189720 798 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 4930590L14Rik-201ENSMUST00000196030 836 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm8365-201ENSMUST00000197334 648 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm44315-201ENSMUST00000203041 219 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm16571-202ENSMUST00000203839 585 ntTSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm7443-201ENSMUST00000206355 378 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm5650-201ENSMUST00000209641 598 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm34237-201ENSMUST00000220575 1257 ntTSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm18065-201ENSMUST00000221395 526 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Gm9661-201ENSMUST00000221611 1122 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 CT009546.1-201ENSMUST00000222573 1120 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 AL645546.2-201ENSMUST00000224526 265 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 AC121912.1-201ENSMUST00000227525 1201 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Olfr492-201ENSMUST00000079865 945 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Olfr1113-201ENSMUST00000079966 981 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Olfr584-201ENSMUST00000098210 964 ntBASIC8.92□□□□□ -0.98
Hoxd3P09027 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
Hoxd3P09027 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC8.92□□□□□ -0.98
Hoxd3P09027 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms