Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ikbkg-207ENSMUST00000114133 6994 ntAPPRIS ALT2 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Gm46430-201ENSMUST00000220478 1989 ntTSL 3 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC9.08□□□□□ -0.96
Hmgb3O54879 Ampd2-203ENSMUST00000102638 3650 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Zfand2a-201ENSMUST00000079996 3169 ntAPPRIS P1 TSL 1 (best) BASIC9.08□□□□□ -0.96
Hmgb3O54879 Pop1-202ENSMUST00000079028 3275 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Plekhb1-205ENSMUST00000107046 2793 ntAPPRIS ALT1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm31816-202ENSMUST00000209591 1332 ntTSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Slc12a6-204ENSMUST00000110991 4556 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 B3galt5-202ENSMUST00000113800 5282 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm15883-201ENSMUST00000153562 1690 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Abcc8-201ENSMUST00000033123 4877 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Zc3hav1-202ENSMUST00000114898 3052 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Tubgcp5-205ENSMUST00000205796 3448 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Cln3-204ENSMUST00000116269 2487 ntAPPRIS P2 TSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Grip1-216ENSMUST00000154238 2482 ntTSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Epb41l4a-201ENSMUST00000025234 3853 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 9130019O22Rik-201ENSMUST00000049052 3878 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Fam47e-202ENSMUST00000131166 1500 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Acaca-201ENSMUST00000020843 9026 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Esr2-202ENSMUST00000101291 3362 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm12015-201ENSMUST00000117065 843 ntBASIC9.07□□□□□ -0.96
Hmgb3O54879 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC9.07□□□□□ -0.96
Hmgb3O54879 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC9.07□□□□□ -0.96
Hmgb3O54879 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm8602-201ENSMUST00000184045 607 ntBASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm5705-201ENSMUST00000066241 711 ntBASIC9.07□□□□□ -0.96
Hmgb3O54879 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Gm8399-201ENSMUST00000082300 1117 ntBASIC9.07□□□□□ -0.96
Hmgb3O54879 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Dnm2-202ENSMUST00000091087 3450 ntAPPRIS ALT1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 C530005A16Rik-201ENSMUST00000142815 2436 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Cox17-202ENSMUST00000120495 3690 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Pigq-218ENSMUST00000208043 2987 ntAPPRIS P3 TSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Lrpap1-201ENSMUST00000030986 2981 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Ints3-201ENSMUST00000029542 4337 ntAPPRIS P2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Asxl2-202ENSMUST00000111215 8887 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Aplp2-201ENSMUST00000072634 3634 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 AC122382.1-201ENSMUST00000225869 2371 ntBASIC9.07□□□□□ -0.96
Hmgb3O54879 Dcun1d2-203ENSMUST00000110839 2937 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Olfr370-203ENSMUST00000214156 2475 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Fam198b-201ENSMUST00000029567 6627 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Ccdc130-202ENSMUST00000098578 2119 ntAPPRIS P3 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Cc2d2a-201ENSMUST00000048150 5484 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Slco5a1-201ENSMUST00000115402 3690 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
Hmgb3O54879 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
Hmgb3O54879 Nup155-201ENSMUST00000163765 6402 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Surf6-201ENSMUST00000047632 2971 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Filip1-201ENSMUST00000093811 4640 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Wdr31-202ENSMUST00000107452 1437 ntAPPRIS ALT1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Mars2-201ENSMUST00000061334 11294 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Ern2-201ENSMUST00000033153 2914 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Smarca5-ps-201ENSMUST00000121843 3123 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 5730455P16Rik-204ENSMUST00000179332 4536 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 AC155245.1-201ENSMUST00000222266 1804 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 Rnasel-204ENSMUST00000182538 2761 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Drp2-206ENSMUST00000153424 7135 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm15547-201ENSMUST00000122152 333 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC9.06□□□□□ -0.96
Hmgb3O54879 Gm6963-201ENSMUST00000147879 379 ntBASIC9.06□□□□□ -0.96
Hmgb3O54879 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
Hmgb3O54879 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms