Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Serpinb6a-203ENSMUST00000076532 1504 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Usp40Q8BWR4 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Usp40Q8BWR4 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Usp40Q8BWR4 Ces2h-201ENSMUST00000172032 2445 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Usp40Q8BWR4 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Usp40Q8BWR4 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Usp40Q8BWR4 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Usp40Q8BWR4 Ccdc136-207ENSMUST00000154619 3356 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Usp40Q8BWR4 AC160410.1-201ENSMUST00000219298 1972 ntBASIC15.15■□□□□ 0.02
Usp40Q8BWR4 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Usp40Q8BWR4 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 B4galnt2-201ENSMUST00000038343 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Gm37264-201ENSMUST00000194916 2192 ntBASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Gm16288-201ENSMUST00000137940 367 ntBASIC15.14■□□□□ 0.01
Usp40Q8BWR4 2610016A17Rik-201ENSMUST00000185211 474 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Lsm8-204ENSMUST00000201141 503 ntTSL 3 BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Gm45680-201ENSMUST00000211135 214 ntTSL 3 BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 AC162938.2-202ENSMUST00000215497 722 ntTSL 5 BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 AC158388.3-202ENSMUST00000225517 775 ntBASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Nt5dc1-202ENSMUST00000099973 761 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Trmt2a-207ENSMUST00000140206 3520 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 BC052040-201ENSMUST00000110918 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Usp40Q8BWR4 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Gm26686-201ENSMUST00000181951 3467 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Gm30228-201ENSMUST00000218501 1949 ntTSL 3 BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Gm42970-201ENSMUST00000196407 1352 ntBASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Gm38192-201ENSMUST00000194364 1847 ntBASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Dmrtc1b-201ENSMUST00000101324 1200 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Dmrtc1b-202ENSMUST00000113609 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Camk2a-204ENSMUST00000115295 979 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Gm5764-201ENSMUST00000118817 885 ntBASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Gm24074-201ENSMUST00000158178 260 ntBASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Olfr527-201ENSMUST00000172230 978 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 AC169511.1-201ENSMUST00000227639 995 ntBASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Rab29-201ENSMUST00000027693 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Cstb-201ENSMUST00000005185 603 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 n-R5s71-201ENSMUST00000093668 119 ntBASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Wfdc6a-201ENSMUST00000099096 805 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Snx29-201ENSMUST00000096273 1622 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Usp40Q8BWR4 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Prss23os-202ENSMUST00000179361 1362 ntBASIC15.12■□□□□ 0.01
Usp40Q8BWR4 AC156631.1-201ENSMUST00000215213 1358 ntTSL 5 BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 AC122860.2-201ENSMUST00000217967 2671 ntBASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 4930579F01Rik-201ENSMUST00000012186 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 AC153524.2-202ENSMUST00000220401 1794 ntBASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Gm11919-201ENSMUST00000117609 721 ntBASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Gm14052-201ENSMUST00000121434 1031 ntBASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Gm12056-201ENSMUST00000148364 1257 ntTSL 5 BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Usp40Q8BWR4 Gm16755-201ENSMUST00000180595 933 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 86 ms