Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm9826-201ENSMUST00000029124 1299 ntBASIC8.97□□□□□ -0.97
Hoxd3P09027 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Gm4978-201ENSMUST00000071565 801 ntBASIC8.97□□□□□ -0.97
Hoxd3P09027 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC8.97□□□□□ -0.97
Hoxd3P09027 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
Hoxd3P09027 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC8.96□□□□□ -0.97
Hoxd3P09027 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.97
Hoxd3P09027 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.97
Hoxd3P09027 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 AC130823.1-201ENSMUST00000228929 1549 ntBASIC8.96□□□□□ -0.97
Hoxd3P09027 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.97
Hoxd3P09027 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
Hoxd3P09027 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.97
Hoxd3P09027 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Amelx-204ENSMUST00000112120 727 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm9164-201ENSMUST00000118700 1014 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm9089-201ENSMUST00000122027 526 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm15218-201ENSMUST00000131006 618 ntTSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm7211-201ENSMUST00000172692 1118 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Vmn2r-ps66-201ENSMUST00000173203 1256 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm18367-201ENSMUST00000176139 600 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm23771-201ENSMUST00000178702 110 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Mir8115-201ENSMUST00000184992 119 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm27910-201ENSMUST00000185004 107 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm37932-201ENSMUST00000192258 1167 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC8.96□□□□□ -0.98
Hoxd3P09027 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm44980-201ENSMUST00000205826 314 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm20136-201ENSMUST00000207501 891 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm44849-201ENSMUST00000207595 484 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm8285-201ENSMUST00000208293 759 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm44551-201ENSMUST00000208804 171 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 D9Wsu149-201ENSMUST00000214169 594 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Olfr1092-ps1-201ENSMUST00000216544 398 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Gm29794-201ENSMUST00000218919 1247 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Reg2-201ENSMUST00000023906 698 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Klk1b22-201ENSMUST00000077528 855 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Arhgef3-204ENSMUST00000225949 3198 ntBASIC8.96□□□□□ -0.98
Hoxd3P09027 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Cit-201ENSMUST00000051704 9514 ntAPPRIS P2 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
Hoxd3P09027 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
Hoxd3P09027 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Hoxd3P09027 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hoxd3P09027 4930566F21Rik-201ENSMUST00000201177 1535 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
Hoxd3P09027 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
Hoxd3P09027 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hoxd3P09027 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC8.95□□□□□ -0.98
Hoxd3P09027 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hoxd3P09027 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hoxd3P09027 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hoxd3P09027 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
Hoxd3P09027 Gm3563-201ENSMUST00000172963 1628 ntBASIC8.95□□□□□ -0.98
Retrieved 100 of 76,532 protein–RNA pairs in 53.6 ms