Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm2594-201ENSMUST00000214774 742 ntBASIC12.89□□□□□ -0.35
Traf1P39428 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC12.89□□□□□ -0.35
Traf1P39428 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Traf1P39428 Olfr71-201ENSMUST00000055401 939 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Traf1P39428 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Traf1P39428 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC12.89□□□□□ -0.35
Traf1P39428 Gm37651-201ENSMUST00000194679 1494 ntBASIC12.89□□□□□ -0.35
Traf1P39428 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC12.89□□□□□ -0.35
Traf1P39428 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
Traf1P39428 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Traf1P39428 AC122811.1-201ENSMUST00000222257 2921 ntBASIC12.89□□□□□ -0.35
Traf1P39428 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Gm37969-201ENSMUST00000195777 3409 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Traf1P39428 1700019D03Rik-202ENSMUST00000114492 3565 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Traf1P39428 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Gm13022-201ENSMUST00000121181 285 ntBASIC12.88□□□□□ -0.35
Traf1P39428 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC12.88□□□□□ -0.35
Traf1P39428 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC12.88□□□□□ -0.35
Traf1P39428 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Gm22146-201ENSMUST00000157397 288 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Gm8451-201ENSMUST00000170338 447 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Traf1P39428 Gm19587-201ENSMUST00000191395 545 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC12.88□□□□□ -0.35
Traf1P39428 Gm35713-201ENSMUST00000210516 199 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Gm8255-201ENSMUST00000218693 305 ntBASIC12.88□□□□□ -0.35
Traf1P39428 AC158392.3-201ENSMUST00000224271 1284 ntBASIC12.88□□□□□ -0.35
Traf1P39428 AC154305.2-201ENSMUST00000225813 901 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Gm7536-201ENSMUST00000077389 444 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Gm5453-201ENSMUST00000080866 447 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Hist1h2bl-201ENSMUST00000091756 381 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Traf1P39428 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Btrc-209ENSMUST00000224478 2194 ntBASIC12.88□□□□□ -0.35
Traf1P39428 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Traf1P39428 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Traf1P39428 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Traf1P39428 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Nmt1-201ENSMUST00000021314 4861 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Traf1P39428 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Ttpa-201ENSMUST00000098244 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 BC043934-202ENSMUST00000185694 2356 ntBASIC12.87□□□□□ -0.35
Traf1P39428 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Traf1P39428 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Smg6-201ENSMUST00000045281 5848 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC12.87□□□□□ -0.35
Traf1P39428 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Ikzf2-204ENSMUST00000188110 1365 ntTSL 5 BASIC12.87□□□□□ -0.35
Traf1P39428 Ikzf2-208ENSMUST00000190855 1359 ntTSL 5 BASIC12.87□□□□□ -0.35
Traf1P39428 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Gm6158-201ENSMUST00000109467 904 ntBASIC12.87□□□□□ -0.35
Traf1P39428 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC12.87□□□□□ -0.35
Traf1P39428 Gm14993-201ENSMUST00000121180 164 ntBASIC12.87□□□□□ -0.35
Traf1P39428 Hyal1-203ENSMUST00000123005 843 ntTSL 3 BASIC12.87□□□□□ -0.35
Traf1P39428 Gm25830-201ENSMUST00000158923 132 ntBASIC12.87□□□□□ -0.35
Traf1P39428 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Traf1P39428 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Traf1P39428 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC12.87□□□□□ -0.35
Traf1P39428 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC12.87□□□□□ -0.35
Traf1P39428 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC12.87□□□□□ -0.35
Traf1P39428 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC12.87□□□□□ -0.35
Traf1P39428 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC12.87□□□□□ -0.35
Traf1P39428 Gm44755-201ENSMUST00000207830 2102 ntBASIC12.87□□□□□ -0.35
Traf1P39428 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC12.87□□□□□ -0.35
Traf1P39428 D830035M03Rik-201ENSMUST00000213677 1041 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Traf1P39428 Gm9102-201ENSMUST00000219250 465 ntBASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms