Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
Cux1P53564 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Cux1P53564 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC16.84■□□□□ 0.29
Cux1P53564 A930003A15Rik-201ENSMUST00000100083 746 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 Snora68-201ENSMUST00000104375 131 ntBASIC16.84■□□□□ 0.29
Cux1P53564 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC16.84■□□□□ 0.29
Cux1P53564 Gm13281-201ENSMUST00000120871 567 ntBASIC16.84■□□□□ 0.29
Cux1P53564 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC16.84■□□□□ 0.29
Cux1P53564 Gm42859-201ENSMUST00000199572 193 ntBASIC16.84■□□□□ 0.29
Cux1P53564 Gm42588-201ENSMUST00000200538 1297 ntBASIC16.84■□□□□ 0.29
Cux1P53564 AC103672.1-201ENSMUST00000227502 365 ntBASIC16.84■□□□□ 0.29
Cux1P53564 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Cux1P53564 Gm42521-201ENSMUST00000199190 2040 ntBASIC16.83■□□□□ 0.29
Cux1P53564 Ppid-201ENSMUST00000029382 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Cux1P53564 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Cux1P53564 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Cux1P53564 Zfp830-201ENSMUST00000056677 1591 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Cux1P53564 Nxpe1-ps-201ENSMUST00000209981 1454 ntBASIC16.83■□□□□ 0.29
Cux1P53564 Gm13120-201ENSMUST00000117343 1446 ntBASIC16.83■□□□□ 0.28
Cux1P53564 Gm13104-201ENSMUST00000119651 1446 ntBASIC16.83■□□□□ 0.28
Cux1P53564 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Gm16677-201ENSMUST00000181229 2174 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Gm27174-201ENSMUST00000184493 2174 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Npy1r-201ENSMUST00000039303 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Mir744-201ENSMUST00000103261 100 ntBASIC16.83■□□□□ 0.28
Cux1P53564 1700064H15Rik-201ENSMUST00000119133 394 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Gm15373-201ENSMUST00000121495 214 ntBASIC16.83■□□□□ 0.28
Cux1P53564 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Cux1P53564 Hamp2-203ENSMUST00000217812 437 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Gm46328-201ENSMUST00000217924 976 ntTSL 5 BASIC16.83■□□□□ 0.28
Cux1P53564 AC140381.2-201ENSMUST00000217935 1260 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 AC132384.2-201ENSMUST00000218018 526 ntBASIC16.83■□□□□ 0.28
Cux1P53564 AC134537.1-201ENSMUST00000219205 265 ntBASIC16.83■□□□□ 0.28
Cux1P53564 AC124581.2-201ENSMUST00000225459 282 ntBASIC16.83■□□□□ 0.28
Cux1P53564 AC139155.1-201ENSMUST00000226043 444 ntBASIC16.83■□□□□ 0.28
Cux1P53564 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Cux1P53564 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Cux1P53564 Exosc9-201ENSMUST00000029269 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Krt33b-201ENSMUST00000073890 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Cux1P53564 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Gm13169-201ENSMUST00000122090 1459 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Gm43622-201ENSMUST00000200140 2019 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Cux1P53564 Klk1b5-201ENSMUST00000074359 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Eif2s3y-201ENSMUST00000091197 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Gm23132-201ENSMUST00000104254 132 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Lypla1-202ENSMUST00000115529 930 ntTSL 2 BASIC16.82■□□□□ 0.28
Cux1P53564 Gm13426-201ENSMUST00000117887 795 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Gm12435-201ENSMUST00000118949 1016 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC16.82■□□□□ 0.28
Cux1P53564 Gm25394-201ENSMUST00000157338 133 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Gm22994-201ENSMUST00000175422 82 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Gm17733-201ENSMUST00000181883 1048 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Rian-210ENSMUST00000182689 295 ntTSL 5 BASIC16.82■□□□□ 0.28
Cux1P53564 Gm8918-201ENSMUST00000190587 1087 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Gm5543-201ENSMUST00000193329 1091 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Gm5865-201ENSMUST00000198713 637 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Pcdh7-207ENSMUST00000199310 659 ntTSL 2 BASIC16.82■□□□□ 0.28
Cux1P53564 Gm17936-201ENSMUST00000199413 988 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Gm29328-212ENSMUST00000209182 1168 ntTSL 5 BASIC16.82■□□□□ 0.28
Cux1P53564 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Gm5424-201ENSMUST00000053865 1240 ntBASIC16.82■□□□□ 0.28
Cux1P53564 1110034G24Rik-201ENSMUST00000061891 1076 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Gm45165-201ENSMUST00000207763 1631 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Tmem181b-ps-201ENSMUST00000167717 1413 ntBASIC16.82■□□□□ 0.28
Cux1P53564 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Stau2-202ENSMUST00000054668 2907 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Cux1P53564 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Cux1P53564 Gm8725-201ENSMUST00000221829 1333 ntBASIC16.81■□□□□ 0.28
Cux1P53564 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Cux1P53564 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Smim24-201ENSMUST00000105322 901 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Eapp-202ENSMUST00000110713 886 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Cux1P53564 Gm14633-201ENSMUST00000121152 470 ntBASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms