Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Bgn-207ENSMUST00000169489 1574 ntAPPRIS P1 TSL 2 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Tiam1-204ENSMUST00000114124 7406 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Slc25a21-202ENSMUST00000110680 918 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm11949-201ENSMUST00000117640 372 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm11836-201ENSMUST00000121022 441 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm14460-201ENSMUST00000121511 639 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm14253-201ENSMUST00000122112 639 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm12885-201ENSMUST00000122246 328 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm21970-201ENSMUST00000160764 884 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Vmn1r-ps52-201ENSMUST00000177426 862 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Mir6374-201ENSMUST00000184003 107 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Mir8093-201ENSMUST00000185043 137 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Tac1-205ENSMUST00000185187 1230 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm38039-201ENSMUST00000195328 443 ntTSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm5982-201ENSMUST00000196234 512 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm7344-201ENSMUST00000212122 1222 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm2517-201ENSMUST00000215651 348 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 AC153505.1-201ENSMUST00000218819 1071 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 E130119H09Rik-201ENSMUST00000223176 978 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Vmn1r223-201ENSMUST00000091719 1086 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
Hoxd3P09027 CT009489.1-201ENSMUST00000227740 1893 ntBASIC8.99□□□□□ -0.97
Hoxd3P09027 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Ankrd11-202ENSMUST00000098334 8455 ntAPPRIS P2 TSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gabrb2-205ENSMUST00000192403 1539 ntAPPRIS ALT1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Gm26783-201ENSMUST00000181197 2377 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Olfr46-203ENSMUST00000214180 7750 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
Hoxd3P09027 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Hoxd3P09027 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 AC122291.1-201ENSMUST00000228937 5748 ntBASIC8.98□□□□□ -0.97
Hoxd3P09027 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 Ppp1r16b-203ENSMUST00000103116 6370 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 BC043934-202ENSMUST00000185694 2356 ntBASIC8.98□□□□□ -0.97
Hoxd3P09027 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Bcl9l-203ENSMUST00000218183 6771 ntAPPRIS P2 TSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Gm22711-201ENSMUST00000116890 133 ntBASIC8.98□□□□□ -0.97
Hoxd3P09027 Gm11700-201ENSMUST00000119409 403 ntBASIC8.98□□□□□ -0.97
Hoxd3P09027 Slc7a12-202ENSMUST00000120484 1010 ntTSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Slc7a12-203ENSMUST00000120801 1069 ntTSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Gm13328-201ENSMUST00000120816 1020 ntBASIC8.98□□□□□ -0.97
Hoxd3P09027 Gm16726-201ENSMUST00000130184 892 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 Far1os-201ENSMUST00000138253 893 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC8.98□□□□□ -0.97
Hoxd3P09027 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC8.98□□□□□ -0.97
Hoxd3P09027 Gm14167-201ENSMUST00000148705 433 ntTSL 3 BASIC8.98□□□□□ -0.97
Hoxd3P09027 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 2610001J05Rik-202ENSMUST00000155856 1077 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
Hoxd3P09027 Gm6485-201ENSMUST00000160676 439 ntBASIC8.98□□□□□ -0.97
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms