Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Gm13351-201ENSMUST00000118087 414 ntBASIC12.93□□□□□ -0.34
Traf1P39428 Gm6322-201ENSMUST00000118789 1004 ntBASIC12.93□□□□□ -0.34
Traf1P39428 Gm11340-201ENSMUST00000119226 412 ntBASIC12.93□□□□□ -0.34
Traf1P39428 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC12.93□□□□□ -0.34
Traf1P39428 AC238811.4-201ENSMUST00000178019 1246 ntBASIC12.93□□□□□ -0.34
Traf1P39428 AC238940.3-201ENSMUST00000178830 1246 ntBASIC12.93□□□□□ -0.34
Traf1P39428 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC12.93□□□□□ -0.34
Traf1P39428 4930557B06Rik-201ENSMUST00000200193 381 ntBASIC12.93□□□□□ -0.34
Traf1P39428 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC12.93□□□□□ -0.34
Traf1P39428 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 AC174797.2-202ENSMUST00000225729 568 ntBASIC12.93□□□□□ -0.34
Traf1P39428 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 4930555K19Rik-201ENSMUST00000060066 171 ntBASIC12.93□□□□□ -0.34
Traf1P39428 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Traf1P39428 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Traf1P39428 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Epb41l3-202ENSMUST00000112680 4073 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Traf1P39428 Serpinb9c-202ENSMUST00000110284 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Traf1P39428 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Traf1P39428 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Gm5308-201ENSMUST00000196752 1354 ntBASIC12.93□□□□□ -0.34
Traf1P39428 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC12.92□□□□□ -0.34
Traf1P39428 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC12.92□□□□□ -0.34
Traf1P39428 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC12.92□□□□□ -0.34
Traf1P39428 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Traf1P39428 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Traf1P39428 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
Traf1P39428 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Gm11560-201ENSMUST00000117567 948 ntBASIC12.92□□□□□ -0.34
Traf1P39428 Gm13600-201ENSMUST00000117949 744 ntBASIC12.92□□□□□ -0.34
Traf1P39428 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC12.92□□□□□ -0.34
Traf1P39428 Gm16030-201ENSMUST00000159098 603 ntBASIC12.92□□□□□ -0.34
Traf1P39428 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Gm9353-201ENSMUST00000200472 604 ntBASIC12.92□□□□□ -0.34
Traf1P39428 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 AC159002.1-201ENSMUST00000226714 924 ntBASIC12.92□□□□□ -0.34
Traf1P39428 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC12.92□□□□□ -0.34
Traf1P39428 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Gm16380-201ENSMUST00000077997 478 ntBASIC12.92□□□□□ -0.34
Traf1P39428 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
Traf1P39428 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Gm21136-201ENSMUST00000186812 2575 ntBASIC12.92□□□□□ -0.34
Traf1P39428 Gm6605-201ENSMUST00000031488 2574 ntBASIC12.92□□□□□ -0.34
Traf1P39428 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
Traf1P39428 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Hcrtr2-203ENSMUST00000184757 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Zdhhc6-205ENSMUST00000224291 2603 ntBASIC12.92□□□□□ -0.34
Traf1P39428 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Traf1P39428 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC12.91□□□□□ -0.34
Traf1P39428 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Gtf2a1-202ENSMUST00000063314 2265 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Gm44106-201ENSMUST00000203153 1599 ntBASIC12.91□□□□□ -0.34
Traf1P39428 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Gm21939-201ENSMUST00000221137 2773 ntBASIC12.91□□□□□ -0.34
Traf1P39428 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Traf1P39428 Ighv1-81-201ENSMUST00000103548 351 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 86.9 ms