Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Prox1-203ENSMUST00000177288 3144 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Stat5a-201ENSMUST00000004145 3888 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Dctn4-202ENSMUST00000223590 1530 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Ralgapb-202ENSMUST00000109485 6709 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Tep1-201ENSMUST00000006444 8171 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Unc5cl-201ENSMUST00000074574 2838 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Usp11-201ENSMUST00000033383 3467 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Lin54-209ENSMUST00000152387 2760 ntTSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm3756-201ENSMUST00000169182 1355 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Zc3hav1-201ENSMUST00000031850 3400 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Mast2-202ENSMUST00000106484 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Ywhaz-201ENSMUST00000022894 3288 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Epn2-203ENSMUST00000108712 4458 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm11500-201ENSMUST00000118237 601 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm15004-201ENSMUST00000119192 630 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC9.16□□□□□ -0.94
Hmgb3O54879 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm27731-201ENSMUST00000185192 107 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm28937-201ENSMUST00000185413 695 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm29400-201ENSMUST00000187208 695 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm9230-201ENSMUST00000188228 532 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm28662-201ENSMUST00000188446 695 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm28251-201ENSMUST00000188835 695 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm37318-201ENSMUST00000194325 695 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm38017-201ENSMUST00000194768 695 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm37287-201ENSMUST00000195449 695 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm37793-201ENSMUST00000195548 695 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm10312-201ENSMUST00000078515 489 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Wdr37-212ENSMUST00000176922 3780 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Rpe65-202ENSMUST00000196999 1863 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Dffa-201ENSMUST00000030816 2457 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Adgrl3-209ENSMUST00000119385 4905 ntTSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 AC107453.4-201ENSMUST00000227068 1817 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Celf5-202ENSMUST00000119060 4166 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Lpin1-201ENSMUST00000067124 5581 ntAPPRIS P4 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 AC158779.1-201ENSMUST00000228912 3861 ntBASIC9.16□□□□□ -0.94
Hmgb3O54879 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Exosc10-202ENSMUST00000076022 2682 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Ctnnd1-222ENSMUST00000111696 6281 ntTSL 5 BASIC9.16□□□□□ -0.94
Hmgb3O54879 Themis2-201ENSMUST00000045154 3079 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hmgb3O54879 Pdzd7-202ENSMUST00000145391 4088 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Dnajc10-201ENSMUST00000028392 4042 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Cdk5rap1-201ENSMUST00000028990 1970 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Pclo-202ENSMUST00000182407 16846 ntTSL 5 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Myo6-203ENSMUST00000113266 7632 ntTSL 5 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Hmcn2-201ENSMUST00000113532 15646 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
Hmgb3O54879 AC149588.2-201ENSMUST00000228182 1859 ntBASIC9.15□□□□□ -0.94
Hmgb3O54879 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Atp11c-201ENSMUST00000033480 5939 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Mtmr7-205ENSMUST00000174205 2679 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Psd-201ENSMUST00000041391 3900 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Adgrd1-201ENSMUST00000056617 5163 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC9.15□□□□□ -0.94
Hmgb3O54879 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Gm8835-201ENSMUST00000173096 1169 ntBASIC9.15□□□□□ -0.94
Hmgb3O54879 H2-Pa-201ENSMUST00000182803 626 ntBASIC9.15□□□□□ -0.94
Hmgb3O54879 Gm5850-201ENSMUST00000192923 1206 ntBASIC9.15□□□□□ -0.94
Hmgb3O54879 Gm38158-201ENSMUST00000194617 339 ntBASIC9.15□□□□□ -0.94
Hmgb3O54879 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Rps4l-202ENSMUST00000204242 789 ntBASIC9.15□□□□□ -0.94
Hmgb3O54879 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
Hmgb3O54879 Epn2-204ENSMUST00000108713 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Plekha6-202ENSMUST00000105082 7085 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Adamts13-202ENSMUST00000102891 4506 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
Hmgb3O54879 Mov10-203ENSMUST00000106775 3584 ntTSL 5 BASIC9.15□□□□□ -0.95
Retrieved 100 of 76,532 protein–RNA pairs in 46.1 ms