Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdc40Q9DC48 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
Cdc40Q9DC48 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdc40Q9DC48 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC10.4□□□□□ -0.74
Cdc40Q9DC48 BC043934-202ENSMUST00000185694 2356 ntBASIC10.4□□□□□ -0.74
Cdc40Q9DC48 Cacna1c-224ENSMUST00000219018 7516 ntTSL 5 BASIC10.4□□□□□ -0.74
Cdc40Q9DC48 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdc40Q9DC48 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC10.4□□□□□ -0.74
Cdc40Q9DC48 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
Cdc40Q9DC48 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Cdc40Q9DC48 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
Cdc40Q9DC48 Pcdhgb8-201ENSMUST00000195764 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.75
Cdc40Q9DC48 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
Cdc40Q9DC48 5430419D17Rik-203ENSMUST00000208921 7948 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Sipa1l2-202ENSMUST00000212168 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm29895-201ENSMUST00000209933 5652 ntTSL 5 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Ptprg-201ENSMUST00000022264 9213 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Tor1aip2-201ENSMUST00000060404 5135 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Scrn1-201ENSMUST00000019268 4810 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Cit-201ENSMUST00000051704 9514 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm28388-201ENSMUST00000186262 437 ntBASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm37905-201ENSMUST00000195310 341 ntBASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm3793-201ENSMUST00000204973 672 ntBASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm8342-201ENSMUST00000209839 757 ntBASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 AC102368.1-201ENSMUST00000227161 892 ntBASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm23105-201ENSMUST00000083719 134 ntBASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Myo18a-201ENSMUST00000000645 7307 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Tyw1-202ENSMUST00000044204 4698 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Uba1-201ENSMUST00000001989 4071 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Sec16a-201ENSMUST00000091252 8737 ntAPPRIS P2 TSL 5 BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Gm43963-201ENSMUST00000203466 2488 ntBASIC10.39□□□□□ -0.75
Cdc40Q9DC48 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 B3galt5-201ENSMUST00000099497 5147 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Pcdhga7-201ENSMUST00000192511 4730 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Oc90-202ENSMUST00000079776 1670 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm9544-201ENSMUST00000223349 2482 ntBASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm12247-201ENSMUST00000117585 670 ntBASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm7504-201ENSMUST00000201449 424 ntBASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Gm19009-201ENSMUST00000223072 823 ntBASIC10.38□□□□□ -0.75
Cdc40Q9DC48 AC174797.2-202ENSMUST00000225729 568 ntBASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Scg5-201ENSMUST00000024005 1208 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Cdc40Q9DC48 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms