Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Traf1P39428 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Traf1P39428 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Mybph-201ENSMUST00000038445 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Traf1P39428 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Traf1P39428 Prrx1-201ENSMUST00000027878 4952 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Traf1P39428 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Traf1P39428 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Traf1P39428 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Traf1P39428 Gm45416-201ENSMUST00000209713 2201 ntBASIC12.96□□□□□ -0.34
Traf1P39428 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Traf1P39428 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Traf1P39428 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Traf1P39428 Usp44-202ENSMUST00000216224 2449 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Traf1P39428 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
Traf1P39428 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC12.95□□□□□ -0.34
Traf1P39428 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.95□□□□□ -0.34
Traf1P39428 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC12.95□□□□□ -0.34
Traf1P39428 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC12.95□□□□□ -0.34
Traf1P39428 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Gm6024-201ENSMUST00000117850 1558 ntBASIC12.95□□□□□ -0.34
Traf1P39428 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC12.95□□□□□ -0.34
Traf1P39428 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Gm23218-201ENSMUST00000158124 276 ntBASIC12.95□□□□□ -0.34
Traf1P39428 Gm37638-201ENSMUST00000194337 1123 ntBASIC12.95□□□□□ -0.34
Traf1P39428 Gm42655-201ENSMUST00000202782 1134 ntBASIC12.95□□□□□ -0.34
Traf1P39428 Gm7082-201ENSMUST00000209880 969 ntBASIC12.95□□□□□ -0.34
Traf1P39428 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC12.95□□□□□ -0.34
Traf1P39428 CT030653.1-201ENSMUST00000224382 1279 ntBASIC12.95□□□□□ -0.34
Traf1P39428 AC154572.1-201ENSMUST00000226098 1204 ntBASIC12.95□□□□□ -0.34
Traf1P39428 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Cenpu-202ENSMUST00000093518 783 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Gm8420-201ENSMUST00000097103 598 ntBASIC12.95□□□□□ -0.34
Traf1P39428 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Traf1P39428 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Traf1P39428 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC12.95□□□□□ -0.34
Traf1P39428 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Traf1P39428 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC12.95□□□□□ -0.34
Traf1P39428 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Traf1P39428 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Traf1P39428 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC12.94□□□□□ -0.34
Traf1P39428 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Traf1P39428 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 AC154537.1-201ENSMUST00000226101 1304 ntBASIC12.94□□□□□ -0.34
Traf1P39428 Gm18798-201ENSMUST00000187264 1700 ntBASIC12.94□□□□□ -0.34
Traf1P39428 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC12.94□□□□□ -0.34
Traf1P39428 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Traf1P39428 Dnmt3a-203ENSMUST00000111186 5424 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
Traf1P39428 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
Traf1P39428 Gm13284-201ENSMUST00000121020 547 ntBASIC12.94□□□□□ -0.34
Traf1P39428 Gm24248-201ENSMUST00000157321 322 ntBASIC12.94□□□□□ -0.34
Traf1P39428 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC12.94□□□□□ -0.34
Traf1P39428 Gm4753-201ENSMUST00000188327 1255 ntBASIC12.94□□□□□ -0.34
Traf1P39428 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Traf1P39428 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC12.94□□□□□ -0.34
Traf1P39428 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Traf1P39428 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Traf1P39428 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
Traf1P39428 Esr2-202ENSMUST00000101291 3362 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Traf1P39428 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
Traf1P39428 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Traf1P39428 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC12.93□□□□□ -0.34
Traf1P39428 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms