Protein–RNA interactions for Protein: Q99J95

Cdk9, Cyclin-dependent kinase 9, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk9Q99J95 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cdk9Q99J95 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.29■□□□□ 0.84
Cdk9Q99J95 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
Cdk9Q99J95 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC20.29■□□□□ 0.84
Cdk9Q99J95 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.29■□□□□ 0.84
Cdk9Q99J95 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Cdk9Q99J95 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
Cdk9Q99J95 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cdk9Q99J95 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.28■□□□□ 0.84
Cdk9Q99J95 AC116713.1-201ENSMUST00000215074 430 ntBASIC20.28■□□□□ 0.84
Cdk9Q99J95 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cdk9Q99J95 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cdk9Q99J95 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cdk9Q99J95 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cdk9Q99J95 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdk9Q99J95 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdk9Q99J95 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdk9Q99J95 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdk9Q99J95 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdk9Q99J95 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Cdk9Q99J95 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdk9Q99J95 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Cdk9Q99J95 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Cdk9Q99J95 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Cdk9Q99J95 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Cdk9Q99J95 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cdk9Q99J95 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cdk9Q99J95 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Cdk9Q99J95 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Cdk9Q99J95 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cdk9Q99J95 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cdk9Q99J95 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cdk9Q99J95 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cdk9Q99J95 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.24■□□□□ 0.83
Cdk9Q99J95 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.24■□□□□ 0.83
Cdk9Q99J95 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cdk9Q99J95 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cdk9Q99J95 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cdk9Q99J95 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Cdk9Q99J95 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Cdk9Q99J95 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdk9Q99J95 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdk9Q99J95 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.23■□□□□ 0.83
Cdk9Q99J95 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Cdk9Q99J95 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdk9Q99J95 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.23■□□□□ 0.83
Cdk9Q99J95 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdk9Q99J95 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cdk9Q99J95 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cdk9Q99J95 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.22■□□□□ 0.83
Cdk9Q99J95 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cdk9Q99J95 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cdk9Q99J95 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Cdk9Q99J95 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cdk9Q99J95 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Cdk9Q99J95 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.21■□□□□ 0.83
Cdk9Q99J95 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cdk9Q99J95 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdk9Q99J95 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdk9Q99J95 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Cdk9Q99J95 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdk9Q99J95 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdk9Q99J95 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdk9Q99J95 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Cdk9Q99J95 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdk9Q99J95 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdk9Q99J95 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdk9Q99J95 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Cdk9Q99J95 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.2■□□□□ 0.82
Cdk9Q99J95 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdk9Q99J95 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdk9Q99J95 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdk9Q99J95 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdk9Q99J95 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdk9Q99J95 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cdk9Q99J95 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.19■□□□□ 0.82
Cdk9Q99J95 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Cdk9Q99J95 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cdk9Q99J95 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cdk9Q99J95 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cdk9Q99J95 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Cdk9Q99J95 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cdk9Q99J95 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cdk9Q99J95 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cdk9Q99J95 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cdk9Q99J95 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cdk9Q99J95 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cdk9Q99J95 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cdk9Q99J95 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cdk9Q99J95 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.18■□□□□ 0.82
Cdk9Q99J95 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms