Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col7a1Q63870 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC17.28■□□□□ 0.36
Col7a1Q63870 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col7a1Q63870 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Col7a1Q63870 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col7a1Q63870 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col7a1Q63870 Gm6934-201ENSMUST00000194780 1905 ntBASIC17.28■□□□□ 0.36
Col7a1Q63870 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col7a1Q63870 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.27■□□□□ 0.36
Col7a1Q63870 Gm5408-201ENSMUST00000197998 747 ntBASIC17.27■□□□□ 0.36
Col7a1Q63870 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC17.27■□□□□ 0.36
Col7a1Q63870 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col7a1Q63870 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC17.27■□□□□ 0.36
Col7a1Q63870 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.27■□□□□ 0.36
Col7a1Q63870 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col7a1Q63870 Gm715-201ENSMUST00000117865 831 ntBASIC17.27■□□□□ 0.36
Col7a1Q63870 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Col7a1Q63870 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC17.27■□□□□ 0.36
Col7a1Q63870 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col7a1Q63870 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col7a1Q63870 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col7a1Q63870 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.27■□□□□ 0.35
Col7a1Q63870 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
Col7a1Q63870 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col7a1Q63870 Gm15565-201ENSMUST00000118890 427 ntBASIC17.26■□□□□ 0.35
Col7a1Q63870 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col7a1Q63870 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col7a1Q63870 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col7a1Q63870 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col7a1Q63870 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 AC122769.4-201ENSMUST00000228166 901 ntBASIC17.25■□□□□ 0.35
Col7a1Q63870 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col7a1Q63870 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.25■□□□□ 0.35
Col7a1Q63870 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col7a1Q63870 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col7a1Q63870 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col7a1Q63870 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col7a1Q63870 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col7a1Q63870 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Col7a1Q63870 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col7a1Q63870 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
Col7a1Q63870 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.24■□□□□ 0.35
Col7a1Q63870 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col7a1Q63870 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col7a1Q63870 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col7a1Q63870 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col7a1Q63870 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col7a1Q63870 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col7a1Q63870 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col7a1Q63870 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col7a1Q63870 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.23■□□□□ 0.35
Col7a1Q63870 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.23■□□□□ 0.35
Col7a1Q63870 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col7a1Q63870 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col7a1Q63870 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Col7a1Q63870 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.22■□□□□ 0.35
Col7a1Q63870 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col7a1Q63870 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col7a1Q63870 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC17.22■□□□□ 0.35
Col7a1Q63870 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col7a1Q63870 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col7a1Q63870 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Col7a1Q63870 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.22■□□□□ 0.35
Col7a1Q63870 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Col7a1Q63870 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col7a1Q63870 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col7a1Q63870 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC17.22■□□□□ 0.35
Col7a1Q63870 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col7a1Q63870 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col7a1Q63870 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.21■□□□□ 0.35
Col7a1Q63870 Gm27045-201ENSMUST00000182145 1402 ntBASIC17.21■□□□□ 0.35
Col7a1Q63870 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col7a1Q63870 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col7a1Q63870 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Col7a1Q63870 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.21■□□□□ 0.35
Col7a1Q63870 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Col7a1Q63870 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Col7a1Q63870 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col7a1Q63870 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC17.2■□□□□ 0.34
Col7a1Q63870 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col7a1Q63870 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col7a1Q63870 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC17.2■□□□□ 0.34
Col7a1Q63870 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC17.2■□□□□ 0.34
Col7a1Q63870 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC17.2■□□□□ 0.34
Col7a1Q63870 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col7a1Q63870 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col7a1Q63870 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col7a1Q63870 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col7a1Q63870 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Col7a1Q63870 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col7a1Q63870 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
Col7a1Q63870 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.19■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 686.4 ms