Protein–RNA interactions for Protein: P97471

Smad4, Mothers against decapentaplegic homolog 4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smad4P97471 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Smad4P97471 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Smad4P97471 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.58■□□□□ 0.89
Smad4P97471 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Smad4P97471 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.58■□□□□ 0.89
Smad4P97471 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Smad4P97471 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.58■□□□□ 0.88
Smad4P97471 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Smad4P97471 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smad4P97471 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smad4P97471 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Smad4P97471 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Smad4P97471 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smad4P97471 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smad4P97471 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smad4P97471 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Smad4P97471 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Smad4P97471 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smad4P97471 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.56■□□□□ 0.88
Smad4P97471 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smad4P97471 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.56■□□□□ 0.88
Smad4P97471 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
Smad4P97471 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smad4P97471 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smad4P97471 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smad4P97471 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smad4P97471 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC20.55■□□□□ 0.88
Smad4P97471 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smad4P97471 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smad4P97471 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smad4P97471 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Smad4P97471 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Smad4P97471 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Smad4P97471 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.54■□□□□ 0.88
Smad4P97471 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smad4P97471 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.54■□□□□ 0.88
Smad4P97471 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Smad4P97471 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smad4P97471 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smad4P97471 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smad4P97471 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smad4P97471 Gm12527-201ENSMUST00000117967 564 ntBASIC20.53■□□□□ 0.88
Smad4P97471 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.53■□□□□ 0.88
Smad4P97471 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smad4P97471 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Smad4P97471 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
Smad4P97471 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC20.52■□□□□ 0.88
Smad4P97471 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smad4P97471 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Smad4P97471 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smad4P97471 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Smad4P97471 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smad4P97471 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smad4P97471 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
Smad4P97471 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smad4P97471 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.51■□□□□ 0.87
Smad4P97471 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smad4P97471 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.51■□□□□ 0.87
Smad4P97471 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Smad4P97471 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Smad4P97471 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smad4P97471 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smad4P97471 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smad4P97471 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smad4P97471 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smad4P97471 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Smad4P97471 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smad4P97471 Gm27801-201ENSMUST00000184174 223 ntBASIC20.5■□□□□ 0.87
Smad4P97471 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.5■□□□□ 0.87
Smad4P97471 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.5■□□□□ 0.87
Smad4P97471 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smad4P97471 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smad4P97471 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smad4P97471 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smad4P97471 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Smad4P97471 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Smad4P97471 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Smad4P97471 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Smad4P97471 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Smad4P97471 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Smad4P97471 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.49■□□□□ 0.87
Smad4P97471 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smad4P97471 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smad4P97471 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Smad4P97471 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.49■□□□□ 0.87
Smad4P97471 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Smad4P97471 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smad4P97471 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Smad4P97471 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC20.48■□□□□ 0.87
Smad4P97471 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Smad4P97471 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smad4P97471 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smad4P97471 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Smad4P97471 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Smad4P97471 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smad4P97471 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smad4P97471 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Smad4P97471 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Smad4P97471 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Smad4P97471 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms