Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 AC160060.1-201ENSMUST00000217840 1813 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Cux1P53564 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Cux1P53564 Gm12530-201ENSMUST00000152074 1759 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Gm15746-201ENSMUST00000120684 1027 ntBASIC16.99■□□□□ 0.31
Cux1P53564 Gm14176-201ENSMUST00000121302 477 ntBASIC16.99■□□□□ 0.31
Cux1P53564 Ube4bos3-201ENSMUST00000155845 756 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Gal3st2b-201ENSMUST00000177958 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Gm31314-201ENSMUST00000201435 609 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Gm5302-201ENSMUST00000202130 796 ntBASIC16.99■□□□□ 0.31
Cux1P53564 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Cux1P53564 Iah1-201ENSMUST00000076813 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 4930555A03Rik-201ENSMUST00000196052 1556 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Zscan10-205ENSMUST00000120967 2609 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Gm1995-201ENSMUST00000220838 2602 ntBASIC16.99■□□□□ 0.31
Cux1P53564 Dcun1d2-206ENSMUST00000203604 2112 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cux1P53564 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC16.98■□□□□ 0.31
Cux1P53564 Krt34-201ENSMUST00000056362 1609 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Gm11235-201ENSMUST00000117763 333 ntBASIC16.98■□□□□ 0.31
Cux1P53564 Gm12009-201ENSMUST00000121361 1100 ntBASIC16.98■□□□□ 0.31
Cux1P53564 Gm14006-201ENSMUST00000122132 981 ntBASIC16.98■□□□□ 0.31
Cux1P53564 Gm5976-201ENSMUST00000180794 996 ntBASIC16.98■□□□□ 0.31
Cux1P53564 Rpl15-ps2-201ENSMUST00000184247 613 ntBASIC16.98■□□□□ 0.31
Cux1P53564 5033404E19Rik-202ENSMUST00000194748 1065 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Gm42617-201ENSMUST00000197640 1229 ntBASIC16.98■□□□□ 0.31
Cux1P53564 Gm5738-201ENSMUST00000206016 779 ntBASIC16.98■□□□□ 0.31
Cux1P53564 Gm8557-201ENSMUST00000220777 475 ntBASIC16.98■□□□□ 0.31
Cux1P53564 AC129217.1-201ENSMUST00000225181 642 ntBASIC16.98■□□□□ 0.31
Cux1P53564 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Cnot8-202ENSMUST00000108843 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Gm18263-201ENSMUST00000220846 1928 ntBASIC16.98■□□□□ 0.31
Cux1P53564 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Gm45206-201ENSMUST00000206885 2285 ntBASIC16.98■□□□□ 0.31
Cux1P53564 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Cux1P53564 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Cux1P53564 Katnal2-208ENSMUST00000137498 1824 ntTSL 5 BASIC16.97■□□□□ 0.31
Cux1P53564 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Efna1-203ENSMUST00000118860 1403 ntTSL 5 BASIC16.97■□□□□ 0.31
Cux1P53564 Atxn7l1-203ENSMUST00000110824 1675 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Gm11473-201ENSMUST00000118980 359 ntBASIC16.97■□□□□ 0.31
Cux1P53564 Bola3-203ENSMUST00000122216 554 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Erg-209ENSMUST00000177450 1280 ntTSL 5 BASIC16.97■□□□□ 0.31
Cux1P53564 Gm13272-201ENSMUST00000179425 811 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Cux1P53564 Gm28356-201ENSMUST00000186941 927 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Gm18122-201ENSMUST00000211390 904 ntBASIC16.97■□□□□ 0.31
Cux1P53564 Gm29689-201ENSMUST00000221076 589 ntBASIC16.97■□□□□ 0.31
Cux1P53564 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Cux1P53564 Gm19817-201ENSMUST00000199764 2132 ntBASIC16.97■□□□□ 0.31
Cux1P53564 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Gm37324-201ENSMUST00000194500 4504 ntBASIC16.97■□□□□ 0.31
Cux1P53564 Slc37a4-201ENSMUST00000165839 2086 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC16.97■□□□□ 0.31
Cux1P53564 Edn1-201ENSMUST00000021796 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Cux1P53564 Mir291b-201ENSMUST00000104838 79 ntBASIC16.96■□□□□ 0.31
Cux1P53564 Paip2-202ENSMUST00000115734 815 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Cux1P53564 Gm15636-201ENSMUST00000119205 668 ntBASIC16.96■□□□□ 0.31
Cux1P53564 Tmem204-202ENSMUST00000153745 902 ntTSL 2 BASIC16.96■□□□□ 0.31
Cux1P53564 Tcl1-203ENSMUST00000175652 535 ntTSL 2 BASIC16.96■□□□□ 0.31
Cux1P53564 Gm3115-202ENSMUST00000177660 618 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Cux1P53564 Gm6337-203ENSMUST00000177662 618 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Cux1P53564 Gm3727-202ENSMUST00000178251 618 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Cux1P53564 Gm38313-201ENSMUST00000191953 1266 ntBASIC16.96■□□□□ 0.31
Cux1P53564 Gm9515-201ENSMUST00000200276 647 ntBASIC16.96■□□□□ 0.31
Cux1P53564 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cux1P53564 2610318N02Rik-202ENSMUST00000207116 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cux1P53564 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Cux1P53564 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Cux1P53564 Epha6-203ENSMUST00000161358 1356 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Cux1P53564 Gm26818-201ENSMUST00000181367 1360 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Cux1P53564 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC16.96■□□□□ 0.31
Cux1P53564 AC154197.1-201ENSMUST00000225136 1382 ntBASIC16.96■□□□□ 0.31
Cux1P53564 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms