Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Mir1905-201ENSMUST00000122779 82 ntBASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gm8723-201ENSMUST00000166076 820 ntBASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gm8701-201ENSMUST00000169259 874 ntBASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gm25951-201ENSMUST00000175330 64 ntBASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gm18776-201ENSMUST00000188833 654 ntBASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gm4593-201ENSMUST00000205334 1555 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 CT030166.5-201ENSMUST00000222249 420 ntBASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 AC154305.2-201ENSMUST00000225813 901 ntBASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Gm45677-201ENSMUST00000209975 1341 ntBASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Sf3b1Q99NB9 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm18798-201ENSMUST00000187264 1700 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm9133-201ENSMUST00000118289 540 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm22846-201ENSMUST00000157706 270 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm16030-201ENSMUST00000159098 603 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm19587-201ENSMUST00000191395 545 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 AC134248.1-201ENSMUST00000216113 1176 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm10254-201ENSMUST00000052888 867 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Nr5a2-205ENSMUST00000192929 1756 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm45496-201ENSMUST00000209918 2917 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm15991-202ENSMUST00000212123 3565 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Gm6024-201ENSMUST00000117850 1558 ntBASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Sf3b1Q99NB9 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sf3b1Q99NB9 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sf3b1Q99NB9 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sf3b1Q99NB9 Foxn4-201ENSMUST00000044790 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sf3b1Q99NB9 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Sf3b1Q99NB9 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sf3b1Q99NB9 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Sf3b1Q99NB9 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sf3b1Q99NB9 Gm24791-201ENSMUST00000104284 131 ntBASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 59.2 ms