Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC13.05□□□□□ -0.32
Traf1P39428 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC13.05□□□□□ -0.32
Traf1P39428 Gm9884-201ENSMUST00000194343 1222 ntBASIC13.05□□□□□ -0.32
Traf1P39428 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Klk1b19-ps-201ENSMUST00000205322 696 ntBASIC13.05□□□□□ -0.32
Traf1P39428 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Gm45120-201ENSMUST00000208880 408 ntBASIC13.05□□□□□ -0.32
Traf1P39428 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC13.05□□□□□ -0.32
Traf1P39428 AC120394.2-201ENSMUST00000213905 702 ntTSL 5 BASIC13.05□□□□□ -0.32
Traf1P39428 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC13.05□□□□□ -0.32
Traf1P39428 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC13.05□□□□□ -0.32
Traf1P39428 AC129308.3-201ENSMUST00000225652 524 ntBASIC13.05□□□□□ -0.32
Traf1P39428 AC099645.1-201ENSMUST00000226476 1105 ntBASIC13.05□□□□□ -0.32
Traf1P39428 CT025602.2-201ENSMUST00000226553 772 ntBASIC13.05□□□□□ -0.32
Traf1P39428 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Traf1P39428 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Traf1P39428 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
Traf1P39428 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Gm37931-201ENSMUST00000194686 2866 ntBASIC13.05□□□□□ -0.32
Traf1P39428 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Gm17213-201ENSMUST00000165161 1360 ntBASIC13.05□□□□□ -0.32
Traf1P39428 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC13.05□□□□□ -0.32
Traf1P39428 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Traf1P39428 Tia1-211ENSMUST00000130967 1445 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Traf1P39428 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
Traf1P39428 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC13.04□□□□□ -0.32
Traf1P39428 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC13.04□□□□□ -0.32
Traf1P39428 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC13.04□□□□□ -0.32
Traf1P39428 Gm22379-201ENSMUST00000157480 131 ntBASIC13.04□□□□□ -0.32
Traf1P39428 Gm22877-201ENSMUST00000175451 105 ntBASIC13.04□□□□□ -0.32
Traf1P39428 Gm3671-201ENSMUST00000182463 1007 ntBASIC13.04□□□□□ -0.32
Traf1P39428 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC13.04□□□□□ -0.32
Traf1P39428 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 Gm42867-201ENSMUST00000202995 469 ntBASIC13.04□□□□□ -0.32
Traf1P39428 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 Gm4811-201ENSMUST00000220879 1220 ntBASIC13.04□□□□□ -0.32
Traf1P39428 CT030166.5-201ENSMUST00000222249 420 ntBASIC13.04□□□□□ -0.32
Traf1P39428 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Traf1P39428 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC13.04□□□□□ -0.32
Traf1P39428 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 AC127597.1-201ENSMUST00000225697 5711 ntBASIC13.04□□□□□ -0.32
Traf1P39428 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Traf1P39428 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Traf1P39428 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Traf1P39428 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Gm34425-201ENSMUST00000216269 3079 ntTSL 5 BASIC13.03□□□□□ -0.32
Traf1P39428 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Traf1P39428 Eya1-209ENSMUST00000190337 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Traf1P39428 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Traf1P39428 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Ighv7-2-201ENSMUST00000103462 354 ntAPPRIS ALT2 BASIC13.03□□□□□ -0.32
Traf1P39428 Gm25148-201ENSMUST00000104611 123 ntBASIC13.03□□□□□ -0.32
Traf1P39428 Gm12030-201ENSMUST00000121917 223 ntBASIC13.03□□□□□ -0.32
Traf1P39428 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Traf1P39428 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Traf1P39428 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC13.03□□□□□ -0.32
Traf1P39428 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Traf1P39428 Gm45410-201ENSMUST00000211331 1093 ntBASIC13.03□□□□□ -0.32
Traf1P39428 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC13.03□□□□□ -0.32
Traf1P39428 AC164618.2-201ENSMUST00000224770 573 ntBASIC13.03□□□□□ -0.32
Traf1P39428 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Traf1P39428 Gm8899-201ENSMUST00000214635 1332 ntBASIC13.03□□□□□ -0.32
Traf1P39428 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Traf1P39428 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
Traf1P39428 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms