Protein–RNA interactions for Protein: Q08624

Hoxc4, Homeobox protein Hox-C4, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc4Q08624 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC10.83□□□□□ -0.68
Hoxc4Q08624 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxc4Q08624 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxc4Q08624 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hoxc4Q08624 Cpeb1-209ENSMUST00000178892 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Gm43051-201ENSMUST00000201096 2678 ntBASIC10.82□□□□□ -0.68
Hoxc4Q08624 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Gm35713-201ENSMUST00000210516 199 ntBASIC10.82□□□□□ -0.68
Hoxc4Q08624 Gm18035-201ENSMUST00000211962 589 ntBASIC10.82□□□□□ -0.68
Hoxc4Q08624 Gm40639-201ENSMUST00000214642 625 ntTSL 5 BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Myl6-203ENSMUST00000217776 562 ntTSL 3 BASIC10.82□□□□□ -0.68
Hoxc4Q08624 AC159196.1-201ENSMUST00000225524 377 ntBASIC10.82□□□□□ -0.68
Hoxc4Q08624 AC130477.1-201ENSMUST00000226982 420 ntBASIC10.82□□□□□ -0.68
Hoxc4Q08624 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Gm25517-201ENSMUST00000083865 134 ntBASIC10.82□□□□□ -0.68
Hoxc4Q08624 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hoxc4Q08624 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Ceacam1-205ENSMUST00000206171 1722 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Rtn4ip1-201ENSMUST00000054418 2981 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 AC174797.1-201ENSMUST00000224339 1649 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gm14592-201ENSMUST00000117201 560 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gm5944-201ENSMUST00000118182 1001 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gm14993-201ENSMUST00000121180 164 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Pax4-202ENSMUST00000164519 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gm9372-201ENSMUST00000168454 430 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 Pax4-203ENSMUST00000171089 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 4930447C11Rik-201ENSMUST00000204503 928 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gm18463-201ENSMUST00000207258 474 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gm18460-201ENSMUST00000208088 464 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gm7959-201ENSMUST00000221823 1078 ntBASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Tfrc-201ENSMUST00000023486 4890 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hoxc4Q08624 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms