Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Mir453-201ENSMUST00000104732 82 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm12783-201ENSMUST00000121425 397 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm16876-201ENSMUST00000151945 760 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm22146-201ENSMUST00000157397 288 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm26982-201ENSMUST00000182250 1151 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm17889-201ENSMUST00000198410 598 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm18463-201ENSMUST00000207258 474 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm18460-201ENSMUST00000208088 464 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Mrpl23-206ENSMUST00000210662 736 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 AC134248.1-201ENSMUST00000216113 1176 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 4930449E01Rik-201ENSMUST00000022711 595 ntTSL 2 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 AC156501.1-201ENSMUST00000228219 270 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Myf6-201ENSMUST00000044210 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Apbb1-201ENSMUST00000081165 2530 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Gm44573-201ENSMUST00000191753 2370 ntBASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Trim54Q9ERP3 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gm44056-201ENSMUST00000204623 1427 ntBASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gm25053-201ENSMUST00000103982 133 ntBASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gm25922-201ENSMUST00000104281 130 ntBASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gm24679-201ENSMUST00000158762 111 ntBASIC12.22□□□□□ -0.45
Trim54Q9ERP3 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gm30946-201ENSMUST00000198288 724 ntBASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gm25053-202ENSMUST00000199731 132 ntBASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Rnf44-217ENSMUST00000150806 3772 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gadl1-202ENSMUST00000119291 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gm18798-201ENSMUST00000187264 1700 ntBASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Trim54Q9ERP3 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms