Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
Scn11aQ9R053 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Scn11aQ9R053 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.21□□□□□ -0.3
Scn11aQ9R053 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Scn11aQ9R053 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Scn11aQ9R053 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.3
Scn11aQ9R053 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Scn11aQ9R053 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Scn11aQ9R053 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC13.21□□□□□ -0.3
Scn11aQ9R053 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Scn11aQ9R053 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Ifna9-201ENSMUST00000102807 573 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Ighv5-15-201ENSMUST00000103457 350 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Blvra-202ENSMUST00000110389 657 ntTSL 3 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Gm16069-201ENSMUST00000131146 545 ntTSL 3 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Bnip2-208ENSMUST00000165389 945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Gm26626-201ENSMUST00000180989 713 ntTSL 2 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Mrgprb7-ps-201ENSMUST00000190238 964 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 Gm7939-201ENSMUST00000201233 1050 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 BC080696-201ENSMUST00000202858 1218 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 AC154806.7-201ENSMUST00000227998 202 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 Rnasek-201ENSMUST00000040428 611 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Hax1-201ENSMUST00000079724 1139 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Lrit3-201ENSMUST00000179187 1683 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Katnal2-208ENSMUST00000137498 1824 ntTSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Skint7-202ENSMUST00000106568 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Gm8019-201ENSMUST00000119317 587 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 Cdk1-202ENSMUST00000119827 1253 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Gm13281-201ENSMUST00000120871 567 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 Gm14320-201ENSMUST00000137275 1023 ntTSL 3 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Aamdc-209ENSMUST00000144858 380 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Gm5244-201ENSMUST00000164001 339 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 Mir6359-201ENSMUST00000183668 81 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 Tbc1d24-211ENSMUST00000201583 893 ntTSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Gm5302-201ENSMUST00000202130 796 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Olfr985-201ENSMUST00000060345 1116 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Gfra2-203ENSMUST00000227697 1323 ntBASIC13.2□□□□□ -0.3
Scn11aQ9R053 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Scn11aQ9R053 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 AC154354.1-203ENSMUST00000225565 1364 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Enpp7-201ENSMUST00000092373 1370 ntAPPRIS P2 TSL 2 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gm7168-201ENSMUST00000088809 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gm44663-201ENSMUST00000206898 3150 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Tekt2-202ENSMUST00000102616 1542 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Hsd3b1-202ENSMUST00000107016 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Ccl19-ps1-201ENSMUST00000119621 327 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gm14052-201ENSMUST00000121434 1031 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Platr17-201ENSMUST00000172817 807 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gm38233-201ENSMUST00000194259 807 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gm38312-201ENSMUST00000195426 1746 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gm43726-201ENSMUST00000199110 775 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gm17936-201ENSMUST00000199413 988 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gm6439-201ENSMUST00000199849 862 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gm32872-201ENSMUST00000220037 205 ntTSL 3 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 AC153524.2-202ENSMUST00000220401 1794 ntBASIC13.19□□□□□ -0.3
Scn11aQ9R053 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 P2rx1-202ENSMUST00000092938 1119 ntTSL 5 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Olfr669-201ENSMUST00000098164 954 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Scn11aQ9R053 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Scn11aQ9R053 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms