Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Smc1aQ9CU62 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC12.69□□□□□ -0.38
Smc1aQ9CU62 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smc1aQ9CU62 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smc1aQ9CU62 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Smc1aQ9CU62 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Smc1aQ9CU62 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Smc1aQ9CU62 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Cd6-202ENSMUST00000039043 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Abca2-201ENSMUST00000102919 8033 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC12.68□□□□□ -0.38
Smc1aQ9CU62 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Mir6958-201ENSMUST00000184207 73 ntBASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Gm38228-201ENSMUST00000193169 1293 ntBASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Gm45575-201ENSMUST00000210283 548 ntBASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Gm9774-201ENSMUST00000047300 1064 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Tmc7-201ENSMUST00000044195 4546 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 AC125374.1-201ENSMUST00000213573 1400 ntBASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 AC154671.1-201ENSMUST00000228617 1578 ntBASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Smc1aQ9CU62 Rgr-203ENSMUST00000225070 4704 ntBASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Chrnb2-203ENSMUST00000200558 3482 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Derl2-206ENSMUST00000143850 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Gm11892-201ENSMUST00000117711 1202 ntBASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Gm15595-201ENSMUST00000120840 961 ntBASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Gm12164-201ENSMUST00000121695 551 ntBASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Gm7593-201ENSMUST00000187246 644 ntBASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Gm38210-201ENSMUST00000191944 809 ntBASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Ankrd31-203ENSMUST00000208758 5859 ntTSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Gm37422-201ENSMUST00000193794 4718 ntBASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Ntrk3-205ENSMUST00000193002 2678 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Cdh15-201ENSMUST00000034443 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Pla2g4c-201ENSMUST00000043612 3382 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Smc1aQ9CU62 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Smc1aQ9CU62 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms