Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
RaraP11416 Gm37954-201ENSMUST00000195400 2071 ntBASIC12.22□□□□□ -0.45
RaraP11416 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC12.21□□□□□ -0.45
RaraP11416 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC12.21□□□□□ -0.45
RaraP11416 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC12.21□□□□□ -0.45
RaraP11416 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Tmem88b-201ENSMUST00000097742 3471 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
RaraP11416 Tmc5-203ENSMUST00000121715 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Clp1-201ENSMUST00000028475 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
RaraP11416 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Krt7-201ENSMUST00000068904 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Tfip11-201ENSMUST00000031288 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
RaraP11416 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC12.21□□□□□ -0.45
RaraP11416 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
RaraP11416 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 1700123L14Rik-201ENSMUST00000090061 1747 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
RaraP11416 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Snord17-201ENSMUST00000104526 238 ntBASIC12.21□□□□□ -0.45
RaraP11416 Ppil2-202ENSMUST00000115719 838 ntTSL 2 BASIC12.21□□□□□ -0.45
RaraP11416 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.21□□□□□ -0.45
RaraP11416 Gm12501-201ENSMUST00000119163 529 ntBASIC12.21□□□□□ -0.45
RaraP11416 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC12.21□□□□□ -0.45
RaraP11416 Gm16341-201ENSMUST00000126385 377 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC12.21□□□□□ -0.45
RaraP11416 Gm4482-201ENSMUST00000200876 742 ntBASIC12.21□□□□□ -0.45
RaraP11416 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC12.21□□□□□ -0.45
RaraP11416 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Gm17825-201ENSMUST00000206836 794 ntBASIC12.21□□□□□ -0.45
RaraP11416 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC12.21□□□□□ -0.45
RaraP11416 Gm5996-201ENSMUST00000211110 718 ntBASIC12.21□□□□□ -0.45
RaraP11416 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC12.21□□□□□ -0.45
RaraP11416 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC12.21□□□□□ -0.45
RaraP11416 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC12.21□□□□□ -0.45
RaraP11416 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Gm9785-201ENSMUST00000062642 1006 ntBASIC12.21□□□□□ -0.45
RaraP11416 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
RaraP11416 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
RaraP11416 Nr2f2-202ENSMUST00000089565 1664 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
RaraP11416 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
RaraP11416 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
RaraP11416 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
RaraP11416 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
RaraP11416 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
RaraP11416 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
RaraP11416 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
RaraP11416 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
RaraP11416 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC12.2□□□□□ -0.46
RaraP11416 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
RaraP11416 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 AC159308.2-201ENSMUST00000213592 2325 ntBASIC12.2□□□□□ -0.46
RaraP11416 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC12.2□□□□□ -0.46
RaraP11416 Gm15549-201ENSMUST00000121595 622 ntBASIC12.2□□□□□ -0.46
RaraP11416 Gm14397-201ENSMUST00000124728 576 ntTSL 3 BASIC12.2□□□□□ -0.46
RaraP11416 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.2□□□□□ -0.46
RaraP11416 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC12.2□□□□□ -0.46
RaraP11416 Gm22885-201ENSMUST00000157410 107 ntBASIC12.2□□□□□ -0.46
RaraP11416 Gm23085-201ENSMUST00000157849 293 ntBASIC12.2□□□□□ -0.46
RaraP11416 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.2□□□□□ -0.46
RaraP11416 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.2□□□□□ -0.46
RaraP11416 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC12.2□□□□□ -0.46
RaraP11416 Gm8615-202ENSMUST00000201946 737 ntTSL 3 BASIC12.2□□□□□ -0.46
RaraP11416 Gm45574-201ENSMUST00000210921 331 ntBASIC12.2□□□□□ -0.46
RaraP11416 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC12.2□□□□□ -0.46
RaraP11416 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 AC159002.1-201ENSMUST00000226714 924 ntBASIC12.2□□□□□ -0.46
RaraP11416 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
RaraP11416 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC12.2□□□□□ -0.46
RaraP11416 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 Gm44369-201ENSMUST00000204543 2175 ntBASIC12.2□□□□□ -0.46
RaraP11416 Pla2g4c-201ENSMUST00000043612 3382 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 AC124433.1-202ENSMUST00000224762 1535 ntBASIC12.2□□□□□ -0.46
RaraP11416 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
RaraP11416 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms