Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Pde4b-206ENSMUST00000106907 1374 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 AC155245.1-201ENSMUST00000222266 1804 ntBASIC11.07□□□□□ -0.64
Chd3B1AR17 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Gm4895-201ENSMUST00000181646 1137 ntBASIC11.07□□□□□ -0.64
Chd3B1AR17 Gm18463-201ENSMUST00000207258 474 ntBASIC11.07□□□□□ -0.64
Chd3B1AR17 Gm18460-201ENSMUST00000208088 464 ntBASIC11.07□□□□□ -0.64
Chd3B1AR17 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC11.07□□□□□ -0.64
Chd3B1AR17 Gm8325-201ENSMUST00000099086 453 ntBASIC11.07□□□□□ -0.64
Chd3B1AR17 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Chd3B1AR17 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Chd3B1AR17 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 AC122860.2-201ENSMUST00000217967 2671 ntBASIC11.06□□□□□ -0.64
Chd3B1AR17 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Gm14005-209ENSMUST00000224993 1832 ntBASIC11.06□□□□□ -0.64
Chd3B1AR17 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 AC122811.1-201ENSMUST00000222257 2921 ntBASIC11.06□□□□□ -0.64
Chd3B1AR17 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Gm44552-201ENSMUST00000205458 1247 ntBASIC11.06□□□□□ -0.64
Chd3B1AR17 Nt5dc1-206ENSMUST00000213269 802 ntTSL 5 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Sssca1-201ENSMUST00000025885 693 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Plec-215ENSMUST00000169108 14853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Gm43931-201ENSMUST00000204817 2870 ntBASIC11.06□□□□□ -0.64
Chd3B1AR17 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Chd3B1AR17 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Gm3642-201ENSMUST00000166895 1762 ntAPPRIS P5 TSL 5 BASIC11.06□□□□□ -0.64
Chd3B1AR17 AC126257.2-201ENSMUST00000215507 2300 ntBASIC11.06□□□□□ -0.64
Chd3B1AR17 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Chd3B1AR17 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Gm42867-201ENSMUST00000202995 469 ntBASIC11.05□□□□□ -0.64
Chd3B1AR17 Gm45758-201ENSMUST00000212448 1006 ntBASIC11.05□□□□□ -0.64
Chd3B1AR17 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Gm7959-201ENSMUST00000221823 1078 ntBASIC11.05□□□□□ -0.64
Chd3B1AR17 Id2-203ENSMUST00000222667 958 ntBASIC11.05□□□□□ -0.64
Chd3B1AR17 Capsl-202ENSMUST00000226688 739 ntBASIC11.05□□□□□ -0.64
Chd3B1AR17 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Olfr889-201ENSMUST00000072290 945 ntTSL 5 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Olfr601-203ENSMUST00000214110 2196 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Olfr601-204ENSMUST00000217416 2195 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Serhl-205ENSMUST00000166427 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Sbsn-205ENSMUST00000182721 677 ntAPPRIS ALT2 TSL 3 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Gm19927-201ENSMUST00000185792 781 ntBASIC11.05□□□□□ -0.64
Chd3B1AR17 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC11.05□□□□□ -0.64
Chd3B1AR17 AC164429.1-201ENSMUST00000224210 518 ntBASIC11.05□□□□□ -0.64
Chd3B1AR17 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Chd3B1AR17 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Chd3B1AR17 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms