Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm45124-201ENSMUST00000206723 2755 ntBASIC17.15■□□□□ 0.34
Cux1P53564 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Cux1P53564 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC17.15■□□□□ 0.34
Cux1P53564 Pdcd10-205ENSMUST00000161137 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Cux1P53564 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Atp5g3-202ENSMUST00000111996 723 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Cux1P53564 Gm45716-201ENSMUST00000124877 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Gm8756-201ENSMUST00000183250 929 ntBASIC17.15■□□□□ 0.34
Cux1P53564 Gm33707-201ENSMUST00000195135 569 ntBASIC17.15■□□□□ 0.34
Cux1P53564 Gm8643-201ENSMUST00000195228 625 ntBASIC17.15■□□□□ 0.34
Cux1P53564 D5Ertd605e-201ENSMUST00000201128 1081 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Gm7735-201ENSMUST00000089098 159 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Cux1P53564 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Cux1P53564 Mapk1ip1-201ENSMUST00000075667 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Cux1P53564 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC17.14■□□□□ 0.34
Cux1P53564 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC17.14■□□□□ 0.33
Cux1P53564 Satb1-204ENSMUST00000133574 3461 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cux1P53564 Gm23439-201ENSMUST00000104292 132 ntBASIC17.14■□□□□ 0.33
Cux1P53564 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cux1P53564 Gm28032-201ENSMUST00000184104 96 ntBASIC17.14■□□□□ 0.33
Cux1P53564 AC160929.1-201ENSMUST00000221247 415 ntBASIC17.14■□□□□ 0.33
Cux1P53564 CT010505.2-201ENSMUST00000227918 998 ntBASIC17.14■□□□□ 0.33
Cux1P53564 Rps9-201ENSMUST00000006496 751 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cux1P53564 Eif2c5-201ENSMUST00000125609 1416 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Cux1P53564 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Cux1P53564 Tstd2-201ENSMUST00000107770 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cux1P53564 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cux1P53564 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Cux1P53564 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Serpinb6a-203ENSMUST00000076532 1504 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Cux1P53564 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Cryzl1-202ENSMUST00000114023 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Cux1P53564 4930533B01Rik-201ENSMUST00000123377 1029 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Cryzl1-206ENSMUST00000124282 1187 ntTSL 5 BASIC17.13■□□□□ 0.33
Cux1P53564 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Gm7255-201ENSMUST00000187371 908 ntBASIC17.13■□□□□ 0.33
Cux1P53564 Gm9619-201ENSMUST00000211587 762 ntBASIC17.13■□□□□ 0.33
Cux1P53564 AC154461.3-201ENSMUST00000224831 573 ntBASIC17.13■□□□□ 0.33
Cux1P53564 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Nmrk2-201ENSMUST00000005069 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Cux1P53564 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
Cux1P53564 Gm17836-201ENSMUST00000191976 1302 ntBASIC17.13■□□□□ 0.33
Cux1P53564 AC159810.1-201ENSMUST00000214838 1480 ntBASIC17.13■□□□□ 0.33
Cux1P53564 3000002C10Rik-201ENSMUST00000125451 1614 ntTSL 2 BASIC17.13■□□□□ 0.33
Cux1P53564 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Cux1P53564 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Srd5a3-203ENSMUST00000113507 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Gpcpd1-202ENSMUST00000060955 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Cux1P53564 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Cux1P53564 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 Plut-202ENSMUST00000174285 1444 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Lyrm1-202ENSMUST00000106516 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 3010001F23Rik-201ENSMUST00000130625 876 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Gm4778-202ENSMUST00000159517 1241 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 Gm43097-201ENSMUST00000196867 151 ntBASIC17.12■□□□□ 0.33
Cux1P53564 Cma1-202ENSMUST00000226280 1090 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
Cux1P53564 Cma1-201ENSMUST00000022834 1074 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Gm43174-201ENSMUST00000195914 2445 ntBASIC17.12■□□□□ 0.33
Cux1P53564 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 Gstm4-203ENSMUST00000178808 1462 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 Hsh2d-201ENSMUST00000072097 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 Gm5472-201ENSMUST00000178604 1678 ntBASIC17.12■□□□□ 0.33
Cux1P53564 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Gm15674-201ENSMUST00000143266 2438 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Ces2h-201ENSMUST00000172032 2445 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Cux1P53564 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Cux1P53564 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms