Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ubfd1Q78JW9 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 AC122840.1-201ENSMUST00000220915 3334 ntBASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm42943-201ENSMUST00000199676 3242 ntBASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Klhl14-201ENSMUST00000049105 4018 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm45416-201ENSMUST00000209713 2201 ntBASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm16397-201ENSMUST00000122201 494 ntBASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm5298-201ENSMUST00000201122 892 ntBASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Gm3619-201ENSMUST00000219947 775 ntBASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Crygb-201ENSMUST00000027090 634 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Trim6-206ENSMUST00000214578 1506 ntTSL 5 BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Slc25a36-202ENSMUST00000085206 5227 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 AC154537.1-201ENSMUST00000226101 1304 ntBASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Irf5-202ENSMUST00000163511 2241 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ubfd1Q78JW9 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm4780-202ENSMUST00000215200 2644 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm14807-201ENSMUST00000116640 983 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm15197-201ENSMUST00000120526 478 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm12030-201ENSMUST00000121917 223 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Cfap100-204ENSMUST00000134224 849 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm17116-201ENSMUST00000169175 1013 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Prr3-206ENSMUST00000173585 770 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm19246-201ENSMUST00000173599 255 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm9116-201ENSMUST00000192400 1018 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm44323-201ENSMUST00000198689 129 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm39288-201ENSMUST00000210554 446 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm4811-201ENSMUST00000220879 1220 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 AC153152.3-201ENSMUST00000222188 1135 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gm26684-202ENSMUST00000228229 8257 ntBASIC11.06□□□□□ -0.64
Ubfd1Q78JW9 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 Gm37014-201ENSMUST00000194723 2253 ntBASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Ubfd1Q78JW9 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms