Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Dclk1-204ENSMUST00000196745 7962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Myo15b-201ENSMUST00000040703 2825 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Gm44369-201ENSMUST00000204543 2175 ntBASIC10.26□□□□□ -0.77
Rfx3P48381 Zfp174-201ENSMUST00000041778 5897 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Magi1-203ENSMUST00000093769 4598 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC10.26□□□□□ -0.77
Rfx3P48381 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Kat6b-204ENSMUST00000182405 6977 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 D830039M14Rik-202ENSMUST00000217740 3362 ntBASIC10.26□□□□□ -0.77
Rfx3P48381 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC10.26□□□□□ -0.77
Rfx3P48381 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
Rfx3P48381 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Cpt1c-201ENSMUST00000063761 2793 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Ss18-202ENSMUST00000040964 4153 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Rfx3P48381 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Gm28035-201ENSMUST00000139454 4238 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Rfx3P48381 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Gm5846-201ENSMUST00000193146 1414 ntBASIC10.25□□□□□ -0.77
Rfx3P48381 Gm6559-201ENSMUST00000204678 1694 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Siglec1-203ENSMUST00000110227 5790 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Scn5a-203ENSMUST00000120420 7536 ntAPPRIS ALT1 TSL 5 BASIC10.25□□□□□ -0.77
Rfx3P48381 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Dld-201ENSMUST00000110857 2544 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Zmym3-209ENSMUST00000121520 5564 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Rfx3P48381 Gm45199-201ENSMUST00000207640 1507 ntBASIC10.25□□□□□ -0.77
Rfx3P48381 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Gm23596-201ENSMUST00000104304 132 ntBASIC10.25□□□□□ -0.77
Rfx3P48381 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC10.25□□□□□ -0.77
Rfx3P48381 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC10.25□□□□□ -0.77
Rfx3P48381 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC10.25□□□□□ -0.77
Rfx3P48381 Gm12380-201ENSMUST00000119012 544 ntBASIC10.25□□□□□ -0.77
Rfx3P48381 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC10.25□□□□□ -0.77
Rfx3P48381 Gm14017-201ENSMUST00000121934 386 ntBASIC10.25□□□□□ -0.77
Rfx3P48381 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC10.25□□□□□ -0.77
Rfx3P48381 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
Rfx3P48381 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC10.25□□□□□ -0.77
Rfx3P48381 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC10.25□□□□□ -0.77
Rfx3P48381 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 AC107638.1-201ENSMUST00000213690 1061 ntBASIC10.25□□□□□ -0.77
Rfx3P48381 Gm18730-201ENSMUST00000218038 343 ntBASIC10.25□□□□□ -0.77
Rfx3P48381 Gm8385-201ENSMUST00000058999 643 ntBASIC10.25□□□□□ -0.77
Rfx3P48381 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Rfx3P48381 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Rfx3P48381 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Rfx3P48381 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Rfx3P48381 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC10.25□□□□□ -0.77
Rfx3P48381 Slc25a12-206ENSMUST00000151937 6351 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Myh11-201ENSMUST00000090287 6632 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Rfx3P48381 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Rfx3P48381 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC10.25□□□□□ -0.77
Rfx3P48381 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC10.24□□□□□ -0.77
Rfx3P48381 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Rfx3P48381 Gm28774-201ENSMUST00000187087 1498 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 AC113441.2-201ENSMUST00000221538 1468 ntBASIC10.24□□□□□ -0.77
Rfx3P48381 Gm10829-201ENSMUST00000202084 2988 ntBASIC10.24□□□□□ -0.77
Rfx3P48381 Slc1a4-201ENSMUST00000004634 3872 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Erlin2-201ENSMUST00000033873 4838 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 4933413J09Rik-202ENSMUST00000059648 3387 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Pcdhgb8-201ENSMUST00000195764 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Megf10-201ENSMUST00000075770 7514 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
Rfx3P48381 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC10.24□□□□□ -0.77
Rfx3P48381 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Gm11500-201ENSMUST00000118237 601 ntBASIC10.24□□□□□ -0.77
Rfx3P48381 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC10.24□□□□□ -0.77
Rfx3P48381 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
Rfx3P48381 1810020O05Rik-201ENSMUST00000162547 1047 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Gm7940-201ENSMUST00000218195 769 ntBASIC10.24□□□□□ -0.77
Rfx3P48381 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC10.24□□□□□ -0.77
Rfx3P48381 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Rfx3P48381 Gm5537-201ENSMUST00000091117 1252 ntBASIC10.24□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms