Protein–RNA interactions for Protein: S4R1M3

H2afb2, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb2S4R1M3 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Klhl18-205ENSMUST00000198400 4638 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Spock2-203ENSMUST00000165024 3699 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Tcte1-201ENSMUST00000113547 3074 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
H2afb2S4R1M3 Rnf220-201ENSMUST00000030439 3029 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Gm36940-201ENSMUST00000194281 2036 ntBASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Plscr1-202ENSMUST00000186364 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 AC122291.1-201ENSMUST00000228937 5748 ntBASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Igf1-207ENSMUST00000122386 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 n-R5s64-201ENSMUST00000102019 119 ntBASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Gm12165-201ENSMUST00000117047 342 ntBASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Gm11244-201ENSMUST00000121243 237 ntBASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Tubd1-203ENSMUST00000108030 1964 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Mab21l2-201ENSMUST00000077524 2703 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Gm36987-201ENSMUST00000194704 2979 ntBASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
H2afb2S4R1M3 Jade1-201ENSMUST00000026865 5481 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Pphln1-201ENSMUST00000049122 4023 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Nxpe5-201ENSMUST00000110929 2312 ntAPPRIS P2 TSL 5 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 AC164426.2-201ENSMUST00000225993 2492 ntBASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Dscaml1-201ENSMUST00000034592 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Mical1-202ENSMUST00000099934 3292 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Nuak2-201ENSMUST00000072177 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Gm4294-201ENSMUST00000105169 614 ntBASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Gm4959-201ENSMUST00000197271 1044 ntBASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC11.32□□□□□ -0.6
H2afb2S4R1M3 Gm7183-201ENSMUST00000213870 1005 ntBASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms