Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gabarapl2-201ENSMUST00000034428 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm8302-201ENSMUST00000119217 852 ntBASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm15374-201ENSMUST00000119313 844 ntBASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm23218-201ENSMUST00000158124 276 ntBASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm4895-201ENSMUST00000181646 1137 ntBASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm8197-202ENSMUST00000193422 934 ntBASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm9884-201ENSMUST00000194343 1222 ntBASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm43002-201ENSMUST00000200310 155 ntBASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm6653-201ENSMUST00000218063 1288 ntBASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gm8420-201ENSMUST00000097103 598 ntBASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 CT010447.1-201ENSMUST00000225657 1608 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm12194-201ENSMUST00000117756 1012 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm16341-201ENSMUST00000126385 377 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm22379-201ENSMUST00000157480 131 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm21778-201ENSMUST00000178779 471 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm45592-201ENSMUST00000209605 1043 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Mt1-202ENSMUST00000211807 1085 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 AC165351.1-201ENSMUST00000219078 2020 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm43075-201ENSMUST00000198613 3905 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm43334-201ENSMUST00000197740 1318 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Gm18294-201ENSMUST00000176980 1748 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Sf3b1Q99NB9 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Sf3b1Q99NB9 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms