Protein–RNA interactions for Protein: Q99PF4

Cdh23, Cadherin-23, mousemouse

Predictions only

Length 3,354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh23Q99PF4 Gm42778-201ENSMUST00000199644 553 ntBASIC21.19■□□□□ 0.98
Cdh23Q99PF4 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cdh23Q99PF4 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Cdh23Q99PF4 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.19■□□□□ 0.98
Cdh23Q99PF4 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cdh23Q99PF4 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cdh23Q99PF4 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
Cdh23Q99PF4 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Cdh23Q99PF4 Gm27801-201ENSMUST00000184174 223 ntBASIC21.18■□□□□ 0.98
Cdh23Q99PF4 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cdh23Q99PF4 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cdh23Q99PF4 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cdh23Q99PF4 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.18■□□□□ 0.98
Cdh23Q99PF4 Gm43530-201ENSMUST00000195920 274 ntBASIC21.18■□□□□ 0.98
Cdh23Q99PF4 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.18■□□□□ 0.98
Cdh23Q99PF4 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cdh23Q99PF4 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Gm22240-201ENSMUST00000175225 82 ntBASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Gm7143-201ENSMUST00000222811 859 ntBASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Cdh23Q99PF4 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdh23Q99PF4 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.16■□□□□ 0.98
Cdh23Q99PF4 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Cdh23Q99PF4 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdh23Q99PF4 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdh23Q99PF4 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Cdh23Q99PF4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC21.16■□□□□ 0.98
Cdh23Q99PF4 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Cdh23Q99PF4 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
Cdh23Q99PF4 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Cdh23Q99PF4 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Cdh23Q99PF4 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cdh23Q99PF4 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cdh23Q99PF4 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.14■□□□□ 0.97
Cdh23Q99PF4 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Cdh23Q99PF4 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cdh23Q99PF4 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Cdh23Q99PF4 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Cdh23Q99PF4 AC135963.1-201ENSMUST00000211640 717 ntBASIC21.13■□□□□ 0.97
Cdh23Q99PF4 AC130671.1-201ENSMUST00000227384 1237 ntBASIC21.13■□□□□ 0.97
Cdh23Q99PF4 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Cdh23Q99PF4 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cdh23Q99PF4 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC21.13■□□□□ 0.97
Cdh23Q99PF4 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Cdh23Q99PF4 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Cdh23Q99PF4 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.13■□□□□ 0.97
Cdh23Q99PF4 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Gm13148-201ENSMUST00000118892 745 ntBASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Cdh23Q99PF4 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cdh23Q99PF4 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Cdh23Q99PF4 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Cdh23Q99PF4 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC21.11■□□□□ 0.97
Cdh23Q99PF4 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC21.11■□□□□ 0.97
Cdh23Q99PF4 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Gm4968-201ENSMUST00000071458 858 ntBASIC21.1■□□□□ 0.97
Cdh23Q99PF4 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cdh23Q99PF4 Gm43859-201ENSMUST00000200075 1412 ntBASIC21.09■□□□□ 0.97
Cdh23Q99PF4 Gm20760-201ENSMUST00000179197 648 ntBASIC21.09■□□□□ 0.97
Cdh23Q99PF4 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdh23Q99PF4 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Cdh23Q99PF4 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Cdh23Q99PF4 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.08■□□□□ 0.97
Cdh23Q99PF4 Gm42699-201ENSMUST00000198104 1657 ntBASIC21.08■□□□□ 0.97
Cdh23Q99PF4 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cdh23Q99PF4 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Cdh23Q99PF4 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdh23Q99PF4 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdh23Q99PF4 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cdh23Q99PF4 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms