Protein–RNA interactions for Protein: Q61112

Sdf4, 45 kDa calcium-binding protein, mousemouse

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdf4Q61112 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdf4Q61112 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.62■□□□□ 0.89
Sdf4Q61112 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
Sdf4Q61112 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdf4Q61112 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdf4Q61112 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdf4Q61112 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sdf4Q61112 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sdf4Q61112 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Sdf4Q61112 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.61■□□□□ 0.89
Sdf4Q61112 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdf4Q61112 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.6■□□□□ 0.89
Sdf4Q61112 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdf4Q61112 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Sdf4Q61112 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.6■□□□□ 0.89
Sdf4Q61112 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.6■□□□□ 0.89
Sdf4Q61112 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.6■□□□□ 0.89
Sdf4Q61112 Gm9870-201ENSMUST00000063874 645 ntBASIC20.6■□□□□ 0.89
Sdf4Q61112 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdf4Q61112 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdf4Q61112 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdf4Q61112 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sdf4Q61112 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sdf4Q61112 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
Sdf4Q61112 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Sdf4Q61112 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Sdf4Q61112 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Sdf4Q61112 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sdf4Q61112 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sdf4Q61112 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sdf4Q61112 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sdf4Q61112 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sdf4Q61112 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Sdf4Q61112 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sdf4Q61112 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sdf4Q61112 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sdf4Q61112 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.57■□□□□ 0.88
Sdf4Q61112 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sdf4Q61112 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sdf4Q61112 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.57■□□□□ 0.88
Sdf4Q61112 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Sdf4Q61112 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sdf4Q61112 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sdf4Q61112 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Sdf4Q61112 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.56■□□□□ 0.88
Sdf4Q61112 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sdf4Q61112 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sdf4Q61112 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sdf4Q61112 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sdf4Q61112 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sdf4Q61112 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sdf4Q61112 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.55■□□□□ 0.88
Sdf4Q61112 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sdf4Q61112 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sdf4Q61112 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sdf4Q61112 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sdf4Q61112 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sdf4Q61112 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
Sdf4Q61112 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sdf4Q61112 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sdf4Q61112 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sdf4Q61112 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
Sdf4Q61112 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Sdf4Q61112 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.54■□□□□ 0.88
Sdf4Q61112 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Sdf4Q61112 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sdf4Q61112 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sdf4Q61112 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sdf4Q61112 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sdf4Q61112 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sdf4Q61112 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Sdf4Q61112 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sdf4Q61112 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.53■□□□□ 0.88
Sdf4Q61112 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sdf4Q61112 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sdf4Q61112 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.53■□□□□ 0.88
Sdf4Q61112 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Sdf4Q61112 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sdf4Q61112 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sdf4Q61112 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
Sdf4Q61112 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Sdf4Q61112 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC20.52■□□□□ 0.88
Sdf4Q61112 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Sdf4Q61112 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Sdf4Q61112 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Sdf4Q61112 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Sdf4Q61112 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Sdf4Q61112 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sdf4Q61112 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sdf4Q61112 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.51■□□□□ 0.87
Sdf4Q61112 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC20.51■□□□□ 0.87
Sdf4Q61112 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
Sdf4Q61112 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Sdf4Q61112 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sdf4Q61112 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Sdf4Q61112 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Sdf4Q61112 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.5■□□□□ 0.87
Sdf4Q61112 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sdf4Q61112 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Sdf4Q61112 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms