Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Usf1Q61069 AC115037.1-201ENSMUST00000223391 2173 ntBASIC18.61■□□□□ 0.57
Usf1Q61069 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Usf1Q61069 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usf1Q61069 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Usf1Q61069 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.61■□□□□ 0.57
Usf1Q61069 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usf1Q61069 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Usf1Q61069 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usf1Q61069 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usf1Q61069 Gm10602-201ENSMUST00000098239 609 ntBASIC18.61■□□□□ 0.57
Usf1Q61069 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Usf1Q61069 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usf1Q61069 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usf1Q61069 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usf1Q61069 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usf1Q61069 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC18.6■□□□□ 0.57
Usf1Q61069 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usf1Q61069 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Usf1Q61069 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Usf1Q61069 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC18.6■□□□□ 0.57
Usf1Q61069 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usf1Q61069 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usf1Q61069 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usf1Q61069 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usf1Q61069 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.59■□□□□ 0.57
Usf1Q61069 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Usf1Q61069 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC18.59■□□□□ 0.57
Usf1Q61069 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC18.58■□□□□ 0.57
Usf1Q61069 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Usf1Q61069 Gm11421-201ENSMUST00000122124 294 ntBASIC18.58■□□□□ 0.56
Usf1Q61069 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.58■□□□□ 0.56
Usf1Q61069 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Usf1Q61069 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Usf1Q61069 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usf1Q61069 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Usf1Q61069 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Usf1Q61069 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Usf1Q61069 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usf1Q61069 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usf1Q61069 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usf1Q61069 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC18.57■□□□□ 0.56
Usf1Q61069 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Usf1Q61069 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Usf1Q61069 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.57■□□□□ 0.56
Usf1Q61069 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC18.57■□□□□ 0.56
Usf1Q61069 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC18.57■□□□□ 0.56
Usf1Q61069 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC18.57■□□□□ 0.56
Usf1Q61069 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usf1Q61069 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.57■□□□□ 0.56
Usf1Q61069 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Usf1Q61069 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Usf1Q61069 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Usf1Q61069 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Usf1Q61069 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usf1Q61069 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usf1Q61069 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usf1Q61069 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Usf1Q61069 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Usf1Q61069 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usf1Q61069 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Usf1Q61069 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Usf1Q61069 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.55■□□□□ 0.56
Usf1Q61069 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.55■□□□□ 0.56
Usf1Q61069 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.55■□□□□ 0.56
Usf1Q61069 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Usf1Q61069 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Usf1Q61069 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Usf1Q61069 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC18.55■□□□□ 0.56
Usf1Q61069 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Usf1Q61069 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usf1Q61069 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usf1Q61069 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usf1Q61069 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usf1Q61069 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usf1Q61069 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Usf1Q61069 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Usf1Q61069 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usf1Q61069 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usf1Q61069 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usf1Q61069 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Usf1Q61069 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC18.53■□□□□ 0.56
Usf1Q61069 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usf1Q61069 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usf1Q61069 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usf1Q61069 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC18.53■□□□□ 0.56
Usf1Q61069 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Usf1Q61069 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Usf1Q61069 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms